Cluster: HRGMv2_0389_CGC4
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_0389
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0389_1 | HRGMv2_0389_1_170 | 206740 | 207417 | + | 3.A.1.122.14 |
| pfam | HRGMv2_0389_1 | HRGMv2_0389_1_171 | 207522 | 209894 | + | FtsX | FtsX | MacB_PCD |
| pfam | HRGMv2_0389_1 | HRGMv2_0389_1_172 | 210055 | 210696 | + | DUF3256 |
| CAZyme | HRGMv2_0389_1 | HRGMv2_0389_1_173 | 210949 | 211857 | + | CBM50 |
| pfam | HRGMv2_0389_1 | HRGMv2_0389_1_174 | 212261 | 212968 | - | DUF3823 | DUF3823_C |
| pfam | HRGMv2_0389_1 | HRGMv2_0389_1_175 | 212992 | 214866 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0389_1 | HRGMv2_0389_1_176 | 214874 | 218080 | - | 1.B.14.6.1 |
| TF | HRGMv2_0389_1 | HRGMv2_0389_1_177 | 218570 | 222631 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0389_1 | HRGMv2_0389_1_178 | 222836 | 223888 | - | GH43_34 |
| CAZyme | HRGMv2_0389_1 | HRGMv2_0389_1_179 | 223904 | 225073 | - | GH76 |
| CAZyme | HRGMv2_0389_1 | HRGMv2_0389_1_180 | 225076 | 226875 | - | GH2 |
| CAZyme | HRGMv2_0389_1 | HRGMv2_0389_1_181 | 226908 | 228962 | - | GH127 |
| CAZyme | HRGMv2_0389_1 | HRGMv2_0389_1_182 | 229132 | 230217 | + | GH43_26 |
| NULL(UNKNOWN) | HRGMv2_0389_1 | HRGMv2_0389_1_183 | 230474 | 230596 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0389_1 | HRGMv2_0389_1_184 | 230593 | 231819 | + | 9.B.169.1.2 |
| CAZyme | HRGMv2_0389_1 | HRGMv2_0389_1_185 | 232050 | 233288 | + | GH76 |
| sulfatase | HRGMv2_0389_1 | HRGMv2_0389_1_186 | 233319 | 235808 | + | S1_4 |
| CAZyme | HRGMv2_0389_1 | HRGMv2_0389_1_187 | 235823 | 237313 | + | GH125 |
Gene ID: HRGMv2_0389_1_170
Type: TC
Location: 206740 - 207417 (+)
Type: TC
Location: 206740 - 207417 (+)
Gene ID: HRGMv2_0389_1_171
Type: pfam
Location: 207522 - 209894 (+)
Type: pfam
Location: 207522 - 209894 (+)
Gene ID: HRGMv2_0389_1_172
Type: pfam
Location: 210055 - 210696 (+)
Type: pfam
Location: 210055 - 210696 (+)
Gene ID: HRGMv2_0389_1_173
Type: CAZyme
Location: 210949 - 211857 (+)
Type: CAZyme
Location: 210949 - 211857 (+)
Gene ID: HRGMv2_0389_1_174
Type: pfam
Location: 212261 - 212968 (-)
Type: pfam
Location: 212261 - 212968 (-)
Gene ID: HRGMv2_0389_1_175
Type: pfam
Location: 212992 - 214866 (-)
Type: pfam
Location: 212992 - 214866 (-)
Gene ID: HRGMv2_0389_1_176
Type: TC
Location: 214874 - 218080 (-)
Type: TC
Location: 214874 - 218080 (-)
Gene ID: HRGMv2_0389_1_177
Type: TF
Location: 218570 - 222631 (+)
Type: TF
Location: 218570 - 222631 (+)
Gene ID: HRGMv2_0389_1_178
Type: CAZyme
Location: 222836 - 223888 (-)
Type: CAZyme
Location: 222836 - 223888 (-)
Gene ID: HRGMv2_0389_1_179
Type: CAZyme
Location: 223904 - 225073 (-)
Type: CAZyme
Location: 223904 - 225073 (-)
Gene ID: HRGMv2_0389_1_180
Type: CAZyme
Location: 225076 - 226875 (-)
Type: CAZyme
Location: 225076 - 226875 (-)
Gene ID: HRGMv2_0389_1_181
Type: CAZyme
Location: 226908 - 228962 (-)
Type: CAZyme
Location: 226908 - 228962 (-)
Gene ID: HRGMv2_0389_1_182
Type: CAZyme
Location: 229132 - 230217 (+)
Type: CAZyme
Location: 229132 - 230217 (+)
Gene ID: HRGMv2_0389_1_183
Type:
Location: 230474 - 230596 (+)
Type:
Location: 230474 - 230596 (+)
Gene ID: HRGMv2_0389_1_184
Type: TC
Location: 230593 - 231819 (+)
Type: TC
Location: 230593 - 231819 (+)
Gene ID: HRGMv2_0389_1_185
Type: CAZyme
Location: 232050 - 233288 (+)
Type: CAZyme
Location: 232050 - 233288 (+)
Gene ID: HRGMv2_0389_1_186
Type: sulfatase
Location: 233319 - 235808 (+)
Type: sulfatase
Location: 233319 - 235808 (+)
Gene ID: HRGMv2_0389_1_187
Type: CAZyme
Location: 235823 - 237313 (+)
Type: CAZyme
Location: 235823 - 237313 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.