Cluster: HRGMv2_0389_CGC36
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0389
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0389_18 | HRGMv2_0389_18_48 | 62831 | 64144 | - | GH23 |
| pfam | HRGMv2_0389_18 | HRGMv2_0389_18_49 | 64086 | 64880 | - | DUF5683 |
| TF | HRGMv2_0389_18 | HRGMv2_0389_18_50 | 64893 | 65789 | - | HTH_3 |
| TC | HRGMv2_0389_18 | HRGMv2_0389_18_51 | 65798 | 66565 | - | 8.A.3.2.3 |
| pfam | HRGMv2_0389_18 | HRGMv2_0389_18_52 | 66794 | 67567 | + | SurE |
| CAZyme | HRGMv2_0389_18 | HRGMv2_0389_18_53 | 67564 | 68721 | + | GT19 |
Gene ID: HRGMv2_0389_18_48
Type: CAZyme
Location: 62831 - 64144 (-)
Type: CAZyme
Location: 62831 - 64144 (-)
Gene ID: HRGMv2_0389_18_49
Type: pfam
Location: 64086 - 64880 (-)
Type: pfam
Location: 64086 - 64880 (-)
Gene ID: HRGMv2_0389_18_50
Type: TF
Location: 64893 - 65789 (-)
Type: TF
Location: 64893 - 65789 (-)
Gene ID: HRGMv2_0389_18_51
Type: TC
Location: 65798 - 66565 (-)
Type: TC
Location: 65798 - 66565 (-)
Gene ID: HRGMv2_0389_18_52
Type: pfam
Location: 66794 - 67567 (+)
Type: pfam
Location: 66794 - 67567 (+)
Gene ID: HRGMv2_0389_18_53
Type: CAZyme
Location: 67564 - 68721 (+)
Type: CAZyme
Location: 67564 - 68721 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.