Cluster: HRGMv2_0389_CGC32
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0389
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0389_15 | HRGMv2_0389_15_5 | 3955 | 4842 | + | 3.A.1.131.1 |
| NULL(UNKNOWN) | HRGMv2_0389_15 | HRGMv2_0389_15_6 | 4867 | 5538 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0389_15 | HRGMv2_0389_15_7 | 5564 | 6592 | + | DUF4857 |
| CAZyme | HRGMv2_0389_15 | HRGMv2_0389_15_8 | 7035 | 9008 | - | GH51_2 |
| CAZyme | HRGMv2_0389_15 | HRGMv2_0389_15_9 | 9055 | 10032 | - | GH43_29 |
| TF | HRGMv2_0389_15 | HRGMv2_0389_15_10 | 10301 | 14485 | + | HTH_AraC |
| CAZyme | HRGMv2_0389_15 | HRGMv2_0389_15_11 | 14717 | 15736 | + | GH43_5 |
Gene ID: HRGMv2_0389_15_5
Type: TC
Location: 3955 - 4842 (+)
Type: TC
Location: 3955 - 4842 (+)
Gene ID: HRGMv2_0389_15_6
Type:
Location: 4867 - 5538 (+)
Type:
Location: 4867 - 5538 (+)
Gene ID: HRGMv2_0389_15_7
Type: pfam
Location: 5564 - 6592 (+)
Type: pfam
Location: 5564 - 6592 (+)
Gene ID: HRGMv2_0389_15_8
Type: CAZyme
Location: 7035 - 9008 (-)
Type: CAZyme
Location: 7035 - 9008 (-)
Gene ID: HRGMv2_0389_15_9
Type: CAZyme
Location: 9055 - 10032 (-)
Type: CAZyme
Location: 9055 - 10032 (-)
Gene ID: HRGMv2_0389_15_10
Type: TF
Location: 10301 - 14485 (+)
Type: TF
Location: 10301 - 14485 (+)
Gene ID: HRGMv2_0389_15_11
Type: CAZyme
Location: 14717 - 15736 (+)
Type: CAZyme
Location: 14717 - 15736 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0389_15_11 | vegetarian > vegan | 1.09423 | 0.04443 |