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Cluster: HRGMv2_0389_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0389_5 HRGMv2_0389_5_83 118013 121240 + 1.B.14.6.1
pfam HRGMv2_0389_5 HRGMv2_0389_5_84 121252 123051 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0389_5 HRGMv2_0389_5_85 123065 124189 + GH26
CAZyme HRGMv2_0389_5 HRGMv2_0389_5_86 124197 125369 + GH130_1
TC HRGMv2_0389_5 HRGMv2_0389_5_87 125394 126785 + 2.A.2.3.6
pfam HRGMv2_0389_5 HRGMv2_0389_5_88 126778 127971 + GlcNAc_2-epim
CAZyme HRGMv2_0389_5 HRGMv2_0389_5_89 128141 129568 + CE20
CAZyme HRGMv2_0389_5 HRGMv2_0389_5_90 129632 131977 + GH3
NULL(UNKNOWN) HRGMv2_0389_5 HRGMv2_0389_5_91 132085 132174 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0389_5 HRGMv2_0389_5_92 132344 133660 - GH5_7
CAZyme HRGMv2_0389_5 HRGMv2_0389_5_93 133761 135869 - GH97
peptidase HRGMv2_0389_5 HRGMv2_0389_5_94 136513 137316 + G05.UPW
TC HRGMv2_0389_5 HRGMv2_0389_5_95 137441 139276 + 3.A.18.1.1
pfam HRGMv2_0389_5 HRGMv2_0389_5_96 139376 140866 - Polysacc_synt | Polysacc_synt_3
STP HRGMv2_0389_5 HRGMv2_0389_5_97 140872 141903 - AAA
CAZyme HRGMv2_0389_5 HRGMv2_0389_5_98 142137 143294 + GH43_24
pfam HRGMv2_0389_5 HRGMv2_0389_5_99 143603 144568 - OTCace | OTCace_N
NULL(UNKNOWN) HRGMv2_0389_5 HRGMv2_0389_5_100 144706 146034 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0389_5 HRGMv2_0389_5_101 146276 146836 + 9.B.171.1.2
Gene ID: HRGMv2_0389_5_83
Type: TC
Location: 118013 - 121240 (+)
Gene ID: HRGMv2_0389_5_84
Type: pfam
Location: 121252 - 123051 (+)
Gene ID: HRGMv2_0389_5_85
Type: CAZyme
Location: 123065 - 124189 (+)
Gene ID: HRGMv2_0389_5_86
Type: CAZyme
Location: 124197 - 125369 (+)
Gene ID: HRGMv2_0389_5_87
Type: TC
Location: 125394 - 126785 (+)
Gene ID: HRGMv2_0389_5_88
Type: pfam
Location: 126778 - 127971 (+)
Gene ID: HRGMv2_0389_5_89
Type: CAZyme
Location: 128141 - 129568 (+)
Gene ID: HRGMv2_0389_5_90
Type: CAZyme
Location: 129632 - 131977 (+)
Gene ID: HRGMv2_0389_5_91
Type:
Location: 132085 - 132174 (-)
Gene ID: HRGMv2_0389_5_92
Type: CAZyme
Location: 132344 - 133660 (-)
Gene ID: HRGMv2_0389_5_93
Type: CAZyme
Location: 133761 - 135869 (-)
Gene ID: HRGMv2_0389_5_94
Type: peptidase
Location: 136513 - 137316 (+)
Gene ID: HRGMv2_0389_5_95
Type: TC
Location: 137441 - 139276 (+)
Gene ID: HRGMv2_0389_5_96
Type: pfam
Location: 139376 - 140866 (-)
Gene ID: HRGMv2_0389_5_97
Type: STP
Location: 140872 - 141903 (-)
Gene ID: HRGMv2_0389_5_98
Type: CAZyme
Location: 142137 - 143294 (+)
Gene ID: HRGMv2_0389_5_99
Type: pfam
Location: 143603 - 144568 (-)
Gene ID: HRGMv2_0389_5_100
Type:
Location: 144706 - 146034 (-)
Gene ID: HRGMv2_0389_5_101
Type: TC
Location: 146276 - 146836 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0389_5_86 vegan > omnivore 1.35171 0.01878

🧭 Explore Read Mapping of CGC

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