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Cluster: HRGMv2_0383_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0383_6 HRGMv2_0383_6_55 53774 54874 + 3.A.1.132.3
pfam HRGMv2_0383_6 HRGMv2_0383_6_56 55068 55631 + Flavin_Reduct
pfam HRGMv2_0383_6 HRGMv2_0383_6_57 55628 56335 + AlkZ-rel
CAZyme HRGMv2_0383_6 HRGMv2_0383_6_58 56453 58429 - GH43_17 | GH43_19
pfam HRGMv2_0383_6 HRGMv2_0383_6_59 58532 59542 - Semialdhyde_dh | Semialdhyde_dhC
TC HRGMv2_0383_6 HRGMv2_0383_6_60 59721 61868 + 2.A.37.2.5
pfam HRGMv2_0383_6 HRGMv2_0383_6_61 61871 62587 + ThiF
TC HRGMv2_0383_6 HRGMv2_0383_6_62 62747 63421 + 3.A.1.122.2
Gene ID: HRGMv2_0383_6_55
Type: TC
Location: 53774 - 54874 (+)
Gene ID: HRGMv2_0383_6_56
Type: pfam
Location: 55068 - 55631 (+)
Gene ID: HRGMv2_0383_6_57
Type: pfam
Location: 55628 - 56335 (+)
Gene ID: HRGMv2_0383_6_58
Type: CAZyme
Location: 56453 - 58429 (-)
Gene ID: HRGMv2_0383_6_59
Type: pfam
Location: 58532 - 59542 (-)
Gene ID: HRGMv2_0383_6_60
Type: TC
Location: 59721 - 61868 (+)
Gene ID: HRGMv2_0383_6_61
Type: pfam
Location: 61871 - 62587 (+)
Gene ID: HRGMv2_0383_6_62
Type: TC
Location: 62747 - 63421 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0383_6_60 vegetarian > omnivore 1.00879 0.04616

🧭 Explore Read Mapping of CGC

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