Cluster: HRGMv2_0383_CGC22
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_0383
- CGC Family ID: CGCFAM_06391
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0383_23 | HRGMv2_0383_23_15 | 15336 | 18632 | + | 3.A.5.1.1 |
| TF | HRGMv2_0383_23 | HRGMv2_0383_23_16 | 18883 | 23214 | + | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_0383_23 | HRGMv2_0383_23_17 | 23250 | 23504 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0383_23 | HRGMv2_0383_23_18 | 23798 | 26794 | + | GH2 |
| CAZyme | HRGMv2_0383_23 | HRGMv2_0383_23_19 | 26878 | 30114 | + | PL26 |
| CAZyme | HRGMv2_0383_23 | HRGMv2_0383_23_20 | 30287 | 31666 | + | GH28 |
| CAZyme | HRGMv2_0383_23 | HRGMv2_0383_23_21 | 31960 | 33606 | + | CE12 | CE12 |
| NULL(UNKNOWN) | HRGMv2_0383_23 | HRGMv2_0383_23_22 | 33627 | 33734 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0383_23 | HRGMv2_0383_23_23 | 33800 | 34114 | + | rhaM |
| CAZyme | HRGMv2_0383_23 | HRGMv2_0383_23_24 | 34188 | 35588 | - | GH105 |
| CAZyme | HRGMv2_0383_23 | HRGMv2_0383_23_25 | 35602 | 37551 | - | PL11_1 |
| CAZyme | HRGMv2_0383_23 | HRGMv2_0383_23_26 | 37590 | 39011 | - | GH28 |
| pfam | HRGMv2_0383_23 | HRGMv2_0383_23_27 | 39008 | 39643 | - | DUF4450 |
| CAZyme | HRGMv2_0383_23 | HRGMv2_0383_23_28 | 40212 | 42305 | + | GH42 |
| CAZyme | HRGMv2_0383_23 | HRGMv2_0383_23_29 | 42493 | 43785 | - | CE12 |
| CAZyme | HRGMv2_0383_23 | HRGMv2_0383_23_30 | 43799 | 46576 | - | GH106 |
Gene ID: HRGMv2_0383_23_15
Type: TC
Location: 15336 - 18632 (+)
Type: TC
Location: 15336 - 18632 (+)
Gene ID: HRGMv2_0383_23_16
Type: TF
Location: 18883 - 23214 (+)
Type: TF
Location: 18883 - 23214 (+)
Gene ID: HRGMv2_0383_23_17
Type:
Location: 23250 - 23504 (+)
Type:
Location: 23250 - 23504 (+)
Gene ID: HRGMv2_0383_23_18
Type: CAZyme
Location: 23798 - 26794 (+)
Type: CAZyme
Location: 23798 - 26794 (+)
Gene ID: HRGMv2_0383_23_19
Type: CAZyme
Location: 26878 - 30114 (+)
Type: CAZyme
Location: 26878 - 30114 (+)
Gene ID: HRGMv2_0383_23_20
Type: CAZyme
Location: 30287 - 31666 (+)
Type: CAZyme
Location: 30287 - 31666 (+)
Gene ID: HRGMv2_0383_23_21
Type: CAZyme
Location: 31960 - 33606 (+)
Type: CAZyme
Location: 31960 - 33606 (+)
Gene ID: HRGMv2_0383_23_22
Type:
Location: 33627 - 33734 (+)
Type:
Location: 33627 - 33734 (+)
Gene ID: HRGMv2_0383_23_23
Type: pfam
Location: 33800 - 34114 (+)
Type: pfam
Location: 33800 - 34114 (+)
Gene ID: HRGMv2_0383_23_24
Type: CAZyme
Location: 34188 - 35588 (-)
Type: CAZyme
Location: 34188 - 35588 (-)
Gene ID: HRGMv2_0383_23_25
Type: CAZyme
Location: 35602 - 37551 (-)
Type: CAZyme
Location: 35602 - 37551 (-)
Gene ID: HRGMv2_0383_23_26
Type: CAZyme
Location: 37590 - 39011 (-)
Type: CAZyme
Location: 37590 - 39011 (-)
Gene ID: HRGMv2_0383_23_27
Type: pfam
Location: 39008 - 39643 (-)
Type: pfam
Location: 39008 - 39643 (-)
Gene ID: HRGMv2_0383_23_28
Type: CAZyme
Location: 40212 - 42305 (+)
Type: CAZyme
Location: 40212 - 42305 (+)
Gene ID: HRGMv2_0383_23_29
Type: CAZyme
Location: 42493 - 43785 (-)
Type: CAZyme
Location: 42493 - 43785 (-)
Gene ID: HRGMv2_0383_23_30
Type: CAZyme
Location: 43799 - 46576 (-)
Type: CAZyme
Location: 43799 - 46576 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola caecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0383_23_23 | vegan > omnivore | 1.22509 | 0.02303 |