Cluster: HRGMv2_0383_CGC21
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0383
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0383_22 | HRGMv2_0383_22_34 | 34282 | 35445 | - | 2.A.1.7.17 |
| CAZyme | HRGMv2_0383_22 | HRGMv2_0383_22_35 | 35456 | 37651 | - | GH36 |
| CAZyme | HRGMv2_0383_22 | HRGMv2_0383_22_36 | 37795 | 39660 | - | GH32 |
Gene ID: HRGMv2_0383_22_34
Type: TC
Location: 34282 - 35445 (-)
Type: TC
Location: 34282 - 35445 (-)
Gene ID: HRGMv2_0383_22_35
Type: CAZyme
Location: 35456 - 37651 (-)
Type: CAZyme
Location: 35456 - 37651 (-)
Gene ID: HRGMv2_0383_22_36
Type: CAZyme
Location: 37795 - 39660 (-)
Type: CAZyme
Location: 37795 - 39660 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola caecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0383_22_34 | vegan > omnivore | 1.19359 | 0.02303 |
| HRGMv2_0383_22_34 | vegetarian > omnivore | 1.20688 | 0.04848 |