Cluster: HRGMv2_0381_CGC35
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0381
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0381_43 | HRGMv2_0381_43_14 | 13040 | 14401 | - | GH171 |
| pfam | HRGMv2_0381_43 | HRGMv2_0381_43_15 | 14394 | 15506 | - | RF-1 | PCRF |
| pfam | HRGMv2_0381_43 | HRGMv2_0381_43_16 | 15528 | 16163 | - | Cytidylate_kin2 |
| TC | HRGMv2_0381_43 | HRGMv2_0381_43_17 | 16170 | 17564 | - | 2.A.66.1.32 |
| NULL(UNKNOWN) | HRGMv2_0381_43 | HRGMv2_0381_43_18 | 17774 | 18325 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0381_43 | HRGMv2_0381_43_19 | 18342 | 19817 | - | tRNA-synt_1e | DALR_2 | tRNA-synt_1g | CysS_C |
| TC | HRGMv2_0381_43 | HRGMv2_0381_43_20 | 19908 | 22028 | + | 1.I.1.1.3 |
Gene ID: HRGMv2_0381_43_14
Type: CAZyme
Location: 13040 - 14401 (-)
Type: CAZyme
Location: 13040 - 14401 (-)
Gene ID: HRGMv2_0381_43_15
Type: pfam
Location: 14394 - 15506 (-)
Type: pfam
Location: 14394 - 15506 (-)
Gene ID: HRGMv2_0381_43_16
Type: pfam
Location: 15528 - 16163 (-)
Type: pfam
Location: 15528 - 16163 (-)
Gene ID: HRGMv2_0381_43_17
Type: TC
Location: 16170 - 17564 (-)
Type: TC
Location: 16170 - 17564 (-)
Gene ID: HRGMv2_0381_43_18
Type:
Location: 17774 - 18325 (-)
Type:
Location: 17774 - 18325 (-)
Gene ID: HRGMv2_0381_43_19
Type: pfam
Location: 18342 - 19817 (-)
Type: pfam
Location: 18342 - 19817 (-)
Gene ID: HRGMv2_0381_43_20
Type: TC
Location: 19908 - 22028 (+)
Type: TC
Location: 19908 - 22028 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.