Cluster: HRGMv2_0381_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0381
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0381_8 | HRGMv2_0381_8_27 | 26460 | 27881 | + | CE20 |
| CAZyme | HRGMv2_0381_8 | HRGMv2_0381_8_28 | 27951 | 29135 | - | PL38 |
| pfam | HRGMv2_0381_8 | HRGMv2_0381_8_29 | 29211 | 29963 | - | adh_short | KR | adh_short_C2 | SDR |
| TC | HRGMv2_0381_8 | HRGMv2_0381_8_30 | 30065 | 31516 | - | 2.A.1.14.25 |
| pfam | HRGMv2_0381_8 | HRGMv2_0381_8_31 | 31536 | 31880 | - | Cupin_2 |
| CAZyme | HRGMv2_0381_8 | HRGMv2_0381_8_32 | 31915 | 34122 | - | PL17_2 | PL17_2 |
| CAZyme | HRGMv2_0381_8 | HRGMv2_0381_8_33 | 34138 | 36399 | - | PL6 | PL6_1 |
| CAZyme | HRGMv2_0381_8 | HRGMv2_0381_8_34 | 36414 | 37802 | - | PL6 |
| pfam | HRGMv2_0381_8 | HRGMv2_0381_8_35 | 37928 | 39901 | - | TIG |
| pfam | HRGMv2_0381_8 | HRGMv2_0381_8_36 | 39920 | 41626 | - | TIG |
| TC | HRGMv2_0381_8 | HRGMv2_0381_8_37 | 41646 | 43130 | - | 8.A.46.1.5 |
| TC | HRGMv2_0381_8 | HRGMv2_0381_8_38 | 43176 | 46328 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0381_8_27
Type: CAZyme
Location: 26460 - 27881 (+)
Type: CAZyme
Location: 26460 - 27881 (+)
Gene ID: HRGMv2_0381_8_28
Type: CAZyme
Location: 27951 - 29135 (-)
Type: CAZyme
Location: 27951 - 29135 (-)
Gene ID: HRGMv2_0381_8_29
Type: pfam
Location: 29211 - 29963 (-)
Type: pfam
Location: 29211 - 29963 (-)
Gene ID: HRGMv2_0381_8_30
Type: TC
Location: 30065 - 31516 (-)
Type: TC
Location: 30065 - 31516 (-)
Gene ID: HRGMv2_0381_8_31
Type: pfam
Location: 31536 - 31880 (-)
Type: pfam
Location: 31536 - 31880 (-)
Gene ID: HRGMv2_0381_8_32
Type: CAZyme
Location: 31915 - 34122 (-)
Type: CAZyme
Location: 31915 - 34122 (-)
Gene ID: HRGMv2_0381_8_33
Type: CAZyme
Location: 34138 - 36399 (-)
Type: CAZyme
Location: 34138 - 36399 (-)
Gene ID: HRGMv2_0381_8_34
Type: CAZyme
Location: 36414 - 37802 (-)
Type: CAZyme
Location: 36414 - 37802 (-)
Gene ID: HRGMv2_0381_8_35
Type: pfam
Location: 37928 - 39901 (-)
Type: pfam
Location: 37928 - 39901 (-)
Gene ID: HRGMv2_0381_8_36
Type: pfam
Location: 39920 - 41626 (-)
Type: pfam
Location: 39920 - 41626 (-)
Gene ID: HRGMv2_0381_8_37
Type: TC
Location: 41646 - 43130 (-)
Type: TC
Location: 41646 - 43130 (-)
Gene ID: HRGMv2_0381_8_38
Type: TC
Location: 43176 - 46328 (-)
Type: TC
Location: 43176 - 46328 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.