Cluster: HRGMv2_0378_CGC42
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0378
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0378_29 | HRGMv2_0378_29_13 | 15399 | 16880 | + | GH51 |
| pfam | HRGMv2_0378_29 | HRGMv2_0378_29_14 | 16926 | 18440 | + | GD_AH_second | SAF | GD_AH_C |
| TC | HRGMv2_0378_29 | HRGMv2_0378_29_15 | 18506 | 19810 | + | 2.A.35.1.5 |
| CAZyme | HRGMv2_0378_29 | HRGMv2_0378_29_16 | 20225 | 21592 | - | GH57 |
| CAZyme | HRGMv2_0378_29 | HRGMv2_0378_29_17 | 21647 | 22924 | - | GT4 |
| CAZyme | HRGMv2_0378_29 | HRGMv2_0378_29_18 | 22937 | 24880 | - | GH133 |
Gene ID: HRGMv2_0378_29_13
Type: CAZyme
Location: 15399 - 16880 (+)
Type: CAZyme
Location: 15399 - 16880 (+)
Gene ID: HRGMv2_0378_29_14
Type: pfam
Location: 16926 - 18440 (+)
Type: pfam
Location: 16926 - 18440 (+)
Gene ID: HRGMv2_0378_29_15
Type: TC
Location: 18506 - 19810 (+)
Type: TC
Location: 18506 - 19810 (+)
Gene ID: HRGMv2_0378_29_16
Type: CAZyme
Location: 20225 - 21592 (-)
Type: CAZyme
Location: 20225 - 21592 (-)
Gene ID: HRGMv2_0378_29_17
Type: CAZyme
Location: 21647 - 22924 (-)
Type: CAZyme
Location: 21647 - 22924 (-)
Gene ID: HRGMv2_0378_29_18
Type: CAZyme
Location: 22937 - 24880 (-)
Type: CAZyme
Location: 22937 - 24880 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
43-108
Species
43-108 sp001915545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.