Cluster: HRGMv2_0378_CGC4
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0378
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0378_1 | HRGMv2_0378_1_133 | 175889 | 177241 | - | 2.A.25.1.3 |
| TF | HRGMv2_0378_1 | HRGMv2_0378_1_134 | 177398 | 178252 | + | HTH_AraC |
| TC | HRGMv2_0378_1 | HRGMv2_0378_1_135 | 178292 | 180157 | - | 3.A.16.1.1 |
| TF | HRGMv2_0378_1 | HRGMv2_0378_1_136 | 180354 | 181127 | - | LytTR |
| TC | HRGMv2_0378_1 | HRGMv2_0378_1_137 | 181171 | 182265 | - | 9.B.33.1.1 |
| pfam | HRGMv2_0378_1 | HRGMv2_0378_1_138 | 182618 | 183526 | + | VCA0040-like |
| CAZyme | HRGMv2_0378_1 | HRGMv2_0378_1_139 | 183916 | 184890 | + | GT2 |
| pfam | HRGMv2_0378_1 | HRGMv2_0378_1_140 | 184908 | 186878 | + | Sulfatase |
| pfam | HRGMv2_0378_1 | HRGMv2_0378_1_141 | 186882 | 187292 | + | GtrA_DPMS_TM |
| CAZyme | HRGMv2_0378_1 | HRGMv2_0378_1_142 | 187305 | 189017 | - | GT83 |
| TC | HRGMv2_0378_1 | HRGMv2_0378_1_143 | 189080 | 190909 | - | 3.A.1.106.1 |
Gene ID: HRGMv2_0378_1_133
Type: TC
Location: 175889 - 177241 (-)
Type: TC
Location: 175889 - 177241 (-)
Gene ID: HRGMv2_0378_1_134
Type: TF
Location: 177398 - 178252 (+)
Type: TF
Location: 177398 - 178252 (+)
Gene ID: HRGMv2_0378_1_135
Type: TC
Location: 178292 - 180157 (-)
Type: TC
Location: 178292 - 180157 (-)
Gene ID: HRGMv2_0378_1_136
Type: TF
Location: 180354 - 181127 (-)
Type: TF
Location: 180354 - 181127 (-)
Gene ID: HRGMv2_0378_1_137
Type: TC
Location: 181171 - 182265 (-)
Type: TC
Location: 181171 - 182265 (-)
Gene ID: HRGMv2_0378_1_138
Type: pfam
Location: 182618 - 183526 (+)
Type: pfam
Location: 182618 - 183526 (+)
Gene ID: HRGMv2_0378_1_139
Type: CAZyme
Location: 183916 - 184890 (+)
Type: CAZyme
Location: 183916 - 184890 (+)
Gene ID: HRGMv2_0378_1_140
Type: pfam
Location: 184908 - 186878 (+)
Type: pfam
Location: 184908 - 186878 (+)
Gene ID: HRGMv2_0378_1_141
Type: pfam
Location: 186882 - 187292 (+)
Type: pfam
Location: 186882 - 187292 (+)
Gene ID: HRGMv2_0378_1_142
Type: CAZyme
Location: 187305 - 189017 (-)
Type: CAZyme
Location: 187305 - 189017 (-)
Gene ID: HRGMv2_0378_1_143
Type: TC
Location: 189080 - 190909 (-)
Type: TC
Location: 189080 - 190909 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
43-108
Species
43-108 sp001915545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.