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Cluster: HRGMv2_0372_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0372_14 HRGMv2_0372_14_1 20 1735 - GH5
TC HRGMv2_0372_14 HRGMv2_0372_14_2 1877 2881 + 8.A.5.1.3
CAZyme HRGMv2_0372_14 HRGMv2_0372_14_3 2946 4079 - GH26
CAZyme HRGMv2_0372_14 HRGMv2_0372_14_4 4089 5228 - GH26
TF HRGMv2_0372_14 HRGMv2_0372_14_5 5675 6556 + HTH_AraC
NULL(UNKNOWN) HRGMv2_0372_14 HRGMv2_0372_14_6 6756 7763 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0372_14 HRGMv2_0372_14_7 7793 9064 + GH26
TC HRGMv2_0372_14 HRGMv2_0372_14_8 9099 12383 + 1.B.14.6.1
Gene ID: HRGMv2_0372_14_1
Type: CAZyme
Location: 20 - 1735 (-)
Gene ID: HRGMv2_0372_14_2
Type: TC
Location: 1877 - 2881 (+)
Gene ID: HRGMv2_0372_14_3
Type: CAZyme
Location: 2946 - 4079 (-)
Gene ID: HRGMv2_0372_14_4
Type: CAZyme
Location: 4089 - 5228 (-)
Gene ID: HRGMv2_0372_14_5
Type: TF
Location: 5675 - 6556 (+)
Gene ID: HRGMv2_0372_14_6
Type:
Location: 6756 - 7763 (+)
Gene ID: HRGMv2_0372_14_7
Type: CAZyme
Location: 7793 - 9064 (+)
Gene ID: HRGMv2_0372_14_8
Type: TC
Location: 9099 - 12383 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0372_14_6 vegan > omnivore 1.56737 0.03471

🧭 Explore Read Mapping of CGC

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