Cluster: HRGMv2_0372_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0372
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0372_4 | HRGMv2_0372_4_33 | 32721 | 34601 | - | GH20 |
| sulfatase | HRGMv2_0372_4 | HRGMv2_0372_4_34 | 34598 | 35419 | - | S1_7 |
| pfam | HRGMv2_0372_4 | HRGMv2_0372_4_35 | 35436 | 36440 | - | Metallophos |
| CAZyme | HRGMv2_0372_4 | HRGMv2_0372_4_36 | 36455 | 38059 | - | GH63 |
| pfam | HRGMv2_0372_4 | HRGMv2_0372_4_37 | 38079 | 40016 | - | Alk_phosphatase |
| sulfatase | HRGMv2_0372_4 | HRGMv2_0372_4_38 | 40013 | 40882 | - | S1_14 |
| CAZyme | HRGMv2_0372_4 | HRGMv2_0372_4_39 | 40917 | 43826 | - | GH92 |
| pfam | HRGMv2_0372_4 | HRGMv2_0372_4_40 | 44040 | 45710 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0372_4 | HRGMv2_0372_4_41 | 45733 | 48852 | - | 1.B.14.6.2 |
| TF | HRGMv2_0372_4 | HRGMv2_0372_4_42 | 49208 | 50383 | + | HTH_AraC |
| peptidase | HRGMv2_0372_4 | HRGMv2_0372_4_43 | 50674 | 52449 | - | S49.UPB |
| TC | HRGMv2_0372_4 | HRGMv2_0372_4_44 | 52812 | 53891 | + | 3.A.1.132.3 |
Gene ID: HRGMv2_0372_4_33
Type: CAZyme
Location: 32721 - 34601 (-)
Type: CAZyme
Location: 32721 - 34601 (-)
Gene ID: HRGMv2_0372_4_34
Type: sulfatase
Location: 34598 - 35419 (-)
Type: sulfatase
Location: 34598 - 35419 (-)
Gene ID: HRGMv2_0372_4_35
Type: pfam
Location: 35436 - 36440 (-)
Type: pfam
Location: 35436 - 36440 (-)
Gene ID: HRGMv2_0372_4_36
Type: CAZyme
Location: 36455 - 38059 (-)
Type: CAZyme
Location: 36455 - 38059 (-)
Gene ID: HRGMv2_0372_4_37
Type: pfam
Location: 38079 - 40016 (-)
Type: pfam
Location: 38079 - 40016 (-)
Gene ID: HRGMv2_0372_4_38
Type: sulfatase
Location: 40013 - 40882 (-)
Type: sulfatase
Location: 40013 - 40882 (-)
Gene ID: HRGMv2_0372_4_39
Type: CAZyme
Location: 40917 - 43826 (-)
Type: CAZyme
Location: 40917 - 43826 (-)
Gene ID: HRGMv2_0372_4_40
Type: pfam
Location: 44040 - 45710 (-)
Type: pfam
Location: 44040 - 45710 (-)
Gene ID: HRGMv2_0372_4_41
Type: TC
Location: 45733 - 48852 (-)
Type: TC
Location: 45733 - 48852 (-)
Gene ID: HRGMv2_0372_4_42
Type: TF
Location: 49208 - 50383 (+)
Type: TF
Location: 49208 - 50383 (+)
Gene ID: HRGMv2_0372_4_43
Type: peptidase
Location: 50674 - 52449 (-)
Type: peptidase
Location: 50674 - 52449 (-)
Gene ID: HRGMv2_0372_4_44
Type: TC
Location: 52812 - 53891 (+)
Type: TC
Location: 52812 - 53891 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp938014215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0372_4_34 | vegan > omnivore | 1.19744 | 0.02539 |