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Cluster: HRGMv2_0372_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0372_3 HRGMv2_0372_3_52 59720 62938 + 1.B.14.6.1
pfam HRGMv2_0372_3 HRGMv2_0372_3_53 62958 64823 + SusD_RagB | SusD-like_3
TC HRGMv2_0372_3 HRGMv2_0372_3_54 64847 68014 + 1.B.14.6.13
pfam HRGMv2_0372_3 HRGMv2_0372_3_55 68025 69836 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0372_3 HRGMv2_0372_3_56 69862 70857 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0372_3 HRGMv2_0372_3_57 70860 72299 + GH50
CAZyme HRGMv2_0372_3 HRGMv2_0372_3_58 72320 73792 + GH50
pfam HRGMv2_0372_3 HRGMv2_0372_3_59 73806 75161 + PKD | PKD_3
pfam HRGMv2_0372_3 HRGMv2_0372_3_60 75180 76874 + PKD | PKD_3 | PKD_3
CAZyme HRGMv2_0372_3 HRGMv2_0372_3_61 76957 79155 + GH3
CAZyme HRGMv2_0372_3 HRGMv2_0372_3_62 79188 81020 + GH2
Gene ID: HRGMv2_0372_3_52
Type: TC
Location: 59720 - 62938 (+)
Gene ID: HRGMv2_0372_3_53
Type: pfam
Location: 62958 - 64823 (+)
Gene ID: HRGMv2_0372_3_54
Type: TC
Location: 64847 - 68014 (+)
Gene ID: HRGMv2_0372_3_55
Type: pfam
Location: 68025 - 69836 (+)
Gene ID: HRGMv2_0372_3_56
Type:
Location: 69862 - 70857 (+)
Gene ID: HRGMv2_0372_3_57
Type: CAZyme
Location: 70860 - 72299 (+)
Gene ID: HRGMv2_0372_3_58
Type: CAZyme
Location: 72320 - 73792 (+)
Gene ID: HRGMv2_0372_3_59
Type: pfam
Location: 73806 - 75161 (+)
Gene ID: HRGMv2_0372_3_60
Type: pfam
Location: 75180 - 76874 (+)
Gene ID: HRGMv2_0372_3_61
Type: CAZyme
Location: 76957 - 79155 (+)
Gene ID: HRGMv2_0372_3_62
Type: CAZyme
Location: 79188 - 81020 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0372_3_52 vegan > omnivore 1.28790 0.03471

🧭 Explore Read Mapping of CGC

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