Cluster: HRGMv2_0366_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0366
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0366_1 | HRGMv2_0366_1_19 | 17166 | 18149 | - | 1.A.35.1.2 |
| pfam | HRGMv2_0366_1 | HRGMv2_0366_1_20 | 18217 | 18777 | - | VitK2_biosynth | VitK2_biosynth |
| CAZyme | HRGMv2_0366_1 | HRGMv2_0366_1_21 | 18998 | 20233 | - | GH27 |
Gene ID: HRGMv2_0366_1_19
Type: TC
Location: 17166 - 18149 (-)
Type: TC
Location: 17166 - 18149 (-)
Gene ID: HRGMv2_0366_1_20
Type: pfam
Location: 18217 - 18777 (-)
Type: pfam
Location: 18217 - 18777 (-)
Gene ID: HRGMv2_0366_1_21
Type: CAZyme
Location: 18998 - 20233 (-)
Type: CAZyme
Location: 18998 - 20233 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp022782405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0366_1_21 | vegan > omnivore | 1.17834 | 0.00050 |