Cluster: HRGMv2_0360_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_398 | 476541 | 479180 | - | 1.B.14.6.14 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_399 | 479396 | 480703 | - | Inos-1-P_synth | NAD_binding_5 |
| STP | HRGMv2_0360_1 | HRGMv2_0360_1_400 | 480948 | 481853 | + | PfkB |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_401 | 481946 | 482716 | - | 3.A.1.7.2 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_402 | 482704 | 483573 | - | 3.A.1.7.1 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_403 | 483594 | 484451 | - | 3.A.1.7.1 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_404 | 484467 | 485525 | - | 3.A.1.7.1 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_405 | 485580 | 486575 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_406 | 486819 | 488357 | - | GH51_1 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_407 | 488519 | 489544 | + | YceG |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_408 | 489550 | 490239 | - | TrkA_N |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_409 | 490243 | 492072 | - | 2.A.38.4.3 |
Gene ID: HRGMv2_0360_1_398
Type: TC
Location: 476541 - 479180 (-)
Type: TC
Location: 476541 - 479180 (-)
Gene ID: HRGMv2_0360_1_399
Type: pfam
Location: 479396 - 480703 (-)
Type: pfam
Location: 479396 - 480703 (-)
Gene ID: HRGMv2_0360_1_400
Type: STP
Location: 480948 - 481853 (+)
Type: STP
Location: 480948 - 481853 (+)
Gene ID: HRGMv2_0360_1_401
Type: TC
Location: 481946 - 482716 (-)
Type: TC
Location: 481946 - 482716 (-)
Gene ID: HRGMv2_0360_1_402
Type: TC
Location: 482704 - 483573 (-)
Type: TC
Location: 482704 - 483573 (-)
Gene ID: HRGMv2_0360_1_403
Type: TC
Location: 483594 - 484451 (-)
Type: TC
Location: 483594 - 484451 (-)
Gene ID: HRGMv2_0360_1_404
Type: TC
Location: 484467 - 485525 (-)
Type: TC
Location: 484467 - 485525 (-)
Gene ID: HRGMv2_0360_1_405
Type:
Location: 485580 - 486575 (-)
Type:
Location: 485580 - 486575 (-)
Gene ID: HRGMv2_0360_1_406
Type: CAZyme
Location: 486819 - 488357 (-)
Type: CAZyme
Location: 486819 - 488357 (-)
Gene ID: HRGMv2_0360_1_407
Type: pfam
Location: 488519 - 489544 (+)
Type: pfam
Location: 488519 - 489544 (+)
Gene ID: HRGMv2_0360_1_408
Type: pfam
Location: 489550 - 490239 (-)
Type: pfam
Location: 489550 - 490239 (-)
Gene ID: HRGMv2_0360_1_409
Type: TC
Location: 490243 - 492072 (-)
Type: TC
Location: 490243 - 492072 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.