Cluster: HRGMv2_0360_CGC62
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 11
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3612 | 4285242 | 4286747 | - | 2.A.38.1.1 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3613 | 4287038 | 4289149 | - | GH42 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3614 | 4289149 | 4290555 | - | CE20 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3615 | 4290636 | 4293437 | - | GH2 |
| TF | HRGMv2_0360_1 | HRGMv2_0360_1_3616 | 4293639 | 4294520 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3617 | 4294542 | 4296938 | - | GH95 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_3618 | 4297018 | 4297479 | - | DUF5018-rel |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_3619 | 4297496 | 4299238 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3620 | 4299242 | 4302319 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_3621 | 4302711 | 4306076 | - | TPR_6 | TPR_8 | TPR_8 | DUF5107 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3622 | 4306193 | 4307776 | - | GH30_4 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3623 | 4307805 | 4309190 | - | 2.A.1.1.55 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3624 | 4309218 | 4312004 | - | GH2 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_3625 | 4312369 | 4312542 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_3626 | 4312570 | 4314096 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3627 | 4314093 | 4315097 | + | GT2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3628 | 4315162 | 4316256 | + | GT4 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3629 | 4316253 | 4317386 | + | GT4 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_3630 | 4317399 | 4318445 | + | EpsG |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3631 | 4318465 | 4319499 | + | GT4 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3632 | 4319511 | 4320314 | + | GT2 |
Gene ID: HRGMv2_0360_1_3612
Type: TC
Location: 4285242 - 4286747 (-)
Type: TC
Location: 4285242 - 4286747 (-)
Gene ID: HRGMv2_0360_1_3613
Type: CAZyme
Location: 4287038 - 4289149 (-)
Type: CAZyme
Location: 4287038 - 4289149 (-)
Gene ID: HRGMv2_0360_1_3614
Type: CAZyme
Location: 4289149 - 4290555 (-)
Type: CAZyme
Location: 4289149 - 4290555 (-)
Gene ID: HRGMv2_0360_1_3615
Type: CAZyme
Location: 4290636 - 4293437 (-)
Type: CAZyme
Location: 4290636 - 4293437 (-)
Gene ID: HRGMv2_0360_1_3616
Type: TF
Location: 4293639 - 4294520 (+)
Type: TF
Location: 4293639 - 4294520 (+)
Gene ID: HRGMv2_0360_1_3617
Type: CAZyme
Location: 4294542 - 4296938 (-)
Type: CAZyme
Location: 4294542 - 4296938 (-)
Gene ID: HRGMv2_0360_1_3618
Type: pfam
Location: 4297018 - 4297479 (-)
Type: pfam
Location: 4297018 - 4297479 (-)
Gene ID: HRGMv2_0360_1_3619
Type: pfam
Location: 4297496 - 4299238 (-)
Type: pfam
Location: 4297496 - 4299238 (-)
Gene ID: HRGMv2_0360_1_3620
Type: TC
Location: 4299242 - 4302319 (-)
Type: TC
Location: 4299242 - 4302319 (-)
Gene ID: HRGMv2_0360_1_3621
Type: pfam
Location: 4302711 - 4306076 (-)
Type: pfam
Location: 4302711 - 4306076 (-)
Gene ID: HRGMv2_0360_1_3622
Type: CAZyme
Location: 4306193 - 4307776 (-)
Type: CAZyme
Location: 4306193 - 4307776 (-)
Gene ID: HRGMv2_0360_1_3623
Type: TC
Location: 4307805 - 4309190 (-)
Type: TC
Location: 4307805 - 4309190 (-)
Gene ID: HRGMv2_0360_1_3624
Type: CAZyme
Location: 4309218 - 4312004 (-)
Type: CAZyme
Location: 4309218 - 4312004 (-)
Gene ID: HRGMv2_0360_1_3625
Type:
Location: 4312369 - 4312542 (+)
Type:
Location: 4312369 - 4312542 (+)
Gene ID: HRGMv2_0360_1_3626
Type:
Location: 4312570 - 4314096 (+)
Type:
Location: 4312570 - 4314096 (+)
Gene ID: HRGMv2_0360_1_3627
Type: CAZyme
Location: 4314093 - 4315097 (+)
Type: CAZyme
Location: 4314093 - 4315097 (+)
Gene ID: HRGMv2_0360_1_3628
Type: CAZyme
Location: 4315162 - 4316256 (+)
Type: CAZyme
Location: 4315162 - 4316256 (+)
Gene ID: HRGMv2_0360_1_3629
Type: CAZyme
Location: 4316253 - 4317386 (+)
Type: CAZyme
Location: 4316253 - 4317386 (+)
Gene ID: HRGMv2_0360_1_3630
Type: pfam
Location: 4317399 - 4318445 (+)
Type: pfam
Location: 4317399 - 4318445 (+)
Gene ID: HRGMv2_0360_1_3631
Type: CAZyme
Location: 4318465 - 4319499 (+)
Type: CAZyme
Location: 4318465 - 4319499 (+)
Gene ID: HRGMv2_0360_1_3632
Type: CAZyme
Location: 4319511 - 4320314 (+)
Type: CAZyme
Location: 4319511 - 4320314 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.