Cluster: HRGMv2_0360_CGC60
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3076 | 3738093 | 3739622 | + | 3.A.2.1.5 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3077 | 3739691 | 3739936 | + | 3.A.2.1.6 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_3078 | 3740006 | 3740497 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3079 | 3740436 | 3741473 | + | 3.A.2.1.7 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_3080 | 3741520 | 3741774 | + | ATP-synt_C |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_3081 | 3741793 | 3742296 | + | ATP-synt_B |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3082 | 3742304 | 3742858 | + | 3.A.2.1.5 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3083 | 3742954 | 3744543 | + | 3.A.2.1.2 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3084 | 3744549 | 3745436 | + | 3.A.2.1.5 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_3085 | 3745636 | 3746061 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | HRGMv2_0360_1 | HRGMv2_0360_1_3086 | 3746366 | 3747907 | - | S1_16 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3087 | 3747924 | 3749333 | - | GH29 |
| sulfatase | HRGMv2_0360_1 | HRGMv2_0360_1_3088 | 3749330 | 3750787 | - | S1_27 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_3089 | 3750916 | 3752862 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3090 | 3752886 | 3756101 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0360_1_3076
Type: TC
Location: 3738093 - 3739622 (+)
Type: TC
Location: 3738093 - 3739622 (+)
Gene ID: HRGMv2_0360_1_3077
Type: TC
Location: 3739691 - 3739936 (+)
Type: TC
Location: 3739691 - 3739936 (+)
Gene ID: HRGMv2_0360_1_3078
Type:
Location: 3740006 - 3740497 (+)
Type:
Location: 3740006 - 3740497 (+)
Gene ID: HRGMv2_0360_1_3079
Type: TC
Location: 3740436 - 3741473 (+)
Type: TC
Location: 3740436 - 3741473 (+)
Gene ID: HRGMv2_0360_1_3080
Type: pfam
Location: 3741520 - 3741774 (+)
Type: pfam
Location: 3741520 - 3741774 (+)
Gene ID: HRGMv2_0360_1_3081
Type: pfam
Location: 3741793 - 3742296 (+)
Type: pfam
Location: 3741793 - 3742296 (+)
Gene ID: HRGMv2_0360_1_3082
Type: TC
Location: 3742304 - 3742858 (+)
Type: TC
Location: 3742304 - 3742858 (+)
Gene ID: HRGMv2_0360_1_3083
Type: TC
Location: 3742954 - 3744543 (+)
Type: TC
Location: 3742954 - 3744543 (+)
Gene ID: HRGMv2_0360_1_3084
Type: TC
Location: 3744549 - 3745436 (+)
Type: TC
Location: 3744549 - 3745436 (+)
Gene ID: HRGMv2_0360_1_3085
Type:
Location: 3745636 - 3746061 (-)
Type:
Location: 3745636 - 3746061 (-)
Gene ID: HRGMv2_0360_1_3086
Type: sulfatase
Location: 3746366 - 3747907 (-)
Type: sulfatase
Location: 3746366 - 3747907 (-)
Gene ID: HRGMv2_0360_1_3087
Type: CAZyme
Location: 3747924 - 3749333 (-)
Type: CAZyme
Location: 3747924 - 3749333 (-)
Gene ID: HRGMv2_0360_1_3088
Type: sulfatase
Location: 3749330 - 3750787 (-)
Type: sulfatase
Location: 3749330 - 3750787 (-)
Gene ID: HRGMv2_0360_1_3089
Type: pfam
Location: 3750916 - 3752862 (-)
Type: pfam
Location: 3750916 - 3752862 (-)
Gene ID: HRGMv2_0360_1_3090
Type: TC
Location: 3752886 - 3756101 (-)
Type: TC
Location: 3752886 - 3756101 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.