Cluster: HRGMv2_0360_CGC50
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2160 | 2639188 | 2641290 | - | GH29 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2161 | 2641404 | 2642105 | + | DUF5020 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2162 | 2642138 | 2643430 | + | 2.A.40.7.6 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2163 | 2643596 | 2644513 | + | 3.A.1.128.7 |
Gene ID: HRGMv2_0360_1_2160
Type: CAZyme
Location: 2639188 - 2641290 (-)
Type: CAZyme
Location: 2639188 - 2641290 (-)
Gene ID: HRGMv2_0360_1_2161
Type: pfam
Location: 2641404 - 2642105 (+)
Type: pfam
Location: 2641404 - 2642105 (+)
Gene ID: HRGMv2_0360_1_2162
Type: TC
Location: 2642138 - 2643430 (+)
Type: TC
Location: 2642138 - 2643430 (+)
Gene ID: HRGMv2_0360_1_2163
Type: TC
Location: 2643596 - 2644513 (+)
Type: TC
Location: 2643596 - 2644513 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.