Cluster: HRGMv2_0360_CGC46
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2072 | 2516076 | 2519198 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2073 | 2519217 | 2520953 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2074 | 2521035 | 2522840 | + | GH32 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_2075 | 2523044 | 2525389 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2076 | 2525519 | 2527396 | + | GH32 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2077 | 2527420 | 2529618 | + | GH36 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2078 | 2529664 | 2530824 | + | 2.A.1.7.17 |
Gene ID: HRGMv2_0360_1_2072
Type: TC
Location: 2516076 - 2519198 (+)
Type: TC
Location: 2516076 - 2519198 (+)
Gene ID: HRGMv2_0360_1_2073
Type: pfam
Location: 2519217 - 2520953 (+)
Type: pfam
Location: 2519217 - 2520953 (+)
Gene ID: HRGMv2_0360_1_2074
Type: CAZyme
Location: 2521035 - 2522840 (+)
Type: CAZyme
Location: 2521035 - 2522840 (+)
Gene ID: HRGMv2_0360_1_2075
Type:
Location: 2523044 - 2525389 (+)
Type:
Location: 2523044 - 2525389 (+)
Gene ID: HRGMv2_0360_1_2076
Type: CAZyme
Location: 2525519 - 2527396 (+)
Type: CAZyme
Location: 2525519 - 2527396 (+)
Gene ID: HRGMv2_0360_1_2077
Type: CAZyme
Location: 2527420 - 2529618 (+)
Type: CAZyme
Location: 2527420 - 2529618 (+)
Gene ID: HRGMv2_0360_1_2078
Type: TC
Location: 2529664 - 2530824 (+)
Type: TC
Location: 2529664 - 2530824 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.