Cluster: HRGMv2_0360_CGC39
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1835 | 2202117 | 2202794 | + | 3.A.1.122.2 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1836 | 2202807 | 2205182 | + | FtsX | FtsX | MacB_PCD |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1837 | 2205219 | 2206121 | + | DUF2807 | DUF2807 | DUF4097 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1838 | 2206532 | 2208349 | + | GH2 |
| TF | HRGMv2_0360_1 | HRGMv2_0360_1_1839 | 2208384 | 2212370 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1840 | 2212510 | 2213487 | + | GH43_3 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1841 | 2213492 | 2215522 | + | GH182 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_1842 | 2215612 | 2215980 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1843 | 2216004 | 2216969 | - | 2.A.19.5.2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1844 | 2217168 | 2219090 | + | GH43_19 | GH43_34 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1845 | 2219116 | 2221611 | + | GH51_2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1846 | 2221701 | 2224061 | + | GH35 |
Gene ID: HRGMv2_0360_1_1835
Type: TC
Location: 2202117 - 2202794 (+)
Type: TC
Location: 2202117 - 2202794 (+)
Gene ID: HRGMv2_0360_1_1836
Type: pfam
Location: 2202807 - 2205182 (+)
Type: pfam
Location: 2202807 - 2205182 (+)
Gene ID: HRGMv2_0360_1_1837
Type: pfam
Location: 2205219 - 2206121 (+)
Type: pfam
Location: 2205219 - 2206121 (+)
Gene ID: HRGMv2_0360_1_1838
Type: CAZyme
Location: 2206532 - 2208349 (+)
Type: CAZyme
Location: 2206532 - 2208349 (+)
Gene ID: HRGMv2_0360_1_1839
Type: TF
Location: 2208384 - 2212370 (+)
Type: TF
Location: 2208384 - 2212370 (+)
Gene ID: HRGMv2_0360_1_1840
Type: CAZyme
Location: 2212510 - 2213487 (+)
Type: CAZyme
Location: 2212510 - 2213487 (+)
Gene ID: HRGMv2_0360_1_1841
Type: CAZyme
Location: 2213492 - 2215522 (+)
Type: CAZyme
Location: 2213492 - 2215522 (+)
Gene ID: HRGMv2_0360_1_1842
Type:
Location: 2215612 - 2215980 (-)
Type:
Location: 2215612 - 2215980 (-)
Gene ID: HRGMv2_0360_1_1843
Type: TC
Location: 2216004 - 2216969 (-)
Type: TC
Location: 2216004 - 2216969 (-)
Gene ID: HRGMv2_0360_1_1844
Type: CAZyme
Location: 2217168 - 2219090 (+)
Type: CAZyme
Location: 2217168 - 2219090 (+)
Gene ID: HRGMv2_0360_1_1845
Type: CAZyme
Location: 2219116 - 2221611 (+)
Type: CAZyme
Location: 2219116 - 2221611 (+)
Gene ID: HRGMv2_0360_1_1846
Type: CAZyme
Location: 2221701 - 2224061 (+)
Type: CAZyme
Location: 2221701 - 2224061 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.