Cluster: HRGMv2_0360_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1426 | 1700124 | 1703615 | - | CBM67 | GH78 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1427 | 1703669 | 1705180 | - | GH30_2 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1428 | 1705662 | 1705982 | + | DUF3836 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1429 | 1706009 | 1706842 | + | 9.B.2.1.5 |
Gene ID: HRGMv2_0360_1_1426
Type: CAZyme
Location: 1700124 - 1703615 (-)
Type: CAZyme
Location: 1700124 - 1703615 (-)
Gene ID: HRGMv2_0360_1_1427
Type: CAZyme
Location: 1703669 - 1705180 (-)
Type: CAZyme
Location: 1703669 - 1705180 (-)
Gene ID: HRGMv2_0360_1_1428
Type: pfam
Location: 1705662 - 1705982 (+)
Type: pfam
Location: 1705662 - 1705982 (+)
Gene ID: HRGMv2_0360_1_1429
Type: TC
Location: 1706009 - 1706842 (+)
Type: TC
Location: 1706009 - 1706842 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.