Cluster: HRGMv2_0360_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_84 | 109494 | 111926 | + | GT2 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_85 | 111932 | 113242 | + | SpoIID |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_86 | 113255 | 114523 | + | 2.A.1.25.5 |
Gene ID: HRGMv2_0360_1_84
Type: CAZyme
Location: 109494 - 111926 (+)
Type: CAZyme
Location: 109494 - 111926 (+)
Gene ID: HRGMv2_0360_1_85
Type: pfam
Location: 111932 - 113242 (+)
Type: pfam
Location: 111932 - 113242 (+)
Gene ID: HRGMv2_0360_1_86
Type: TC
Location: 113255 - 114523 (+)
Type: TC
Location: 113255 - 114523 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.