Cluster: HRGMv2_0360_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1146 | 1354000 | 1355268 | + | 9.B.146.1.3 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1147 | 1355273 | 1356604 | + | Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1148 | 1356635 | 1357885 | + | 2.A.103.1.2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1149 | 1357902 | 1359053 | + | GT28 |
Gene ID: HRGMv2_0360_1_1146
Type: TC
Location: 1354000 - 1355268 (+)
Type: TC
Location: 1354000 - 1355268 (+)
Gene ID: HRGMv2_0360_1_1147
Type: pfam
Location: 1355273 - 1356604 (+)
Type: pfam
Location: 1355273 - 1356604 (+)
Gene ID: HRGMv2_0360_1_1148
Type: TC
Location: 1356635 - 1357885 (+)
Type: TC
Location: 1356635 - 1357885 (+)
Gene ID: HRGMv2_0360_1_1149
Type: CAZyme
Location: 1357902 - 1359053 (+)
Type: CAZyme
Location: 1357902 - 1359053 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.