Cluster: HRGMv2_0360_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_70 | 94652 | 96022 | - | 2.A.66.1.33 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_71 | 96141 | 96326 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_72 | 96372 | 97016 | - | T5orf172 | MUG113 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_73 | 97472 | 99700 | - | CBM67 | GH78 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_74 | 99971 | 100534 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_75 | 100645 | 101850 | - | 2.A.1.7.11 |
Gene ID: HRGMv2_0360_1_70
Type: TC
Location: 94652 - 96022 (-)
Type: TC
Location: 94652 - 96022 (-)
Gene ID: HRGMv2_0360_1_71
Type:
Location: 96141 - 96326 (-)
Type:
Location: 96141 - 96326 (-)
Gene ID: HRGMv2_0360_1_72
Type: pfam
Location: 96372 - 97016 (-)
Type: pfam
Location: 96372 - 97016 (-)
Gene ID: HRGMv2_0360_1_73
Type: CAZyme
Location: 97472 - 99700 (-)
Type: CAZyme
Location: 97472 - 99700 (-)
Gene ID: HRGMv2_0360_1_74
Type:
Location: 99971 - 100534 (+)
Type:
Location: 99971 - 100534 (+)
Gene ID: HRGMv2_0360_1_75
Type: TC
Location: 100645 - 101850 (-)
Type: TC
Location: 100645 - 101850 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.