Cluster: HRGMv2_0360_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_773 | 900675 | 901625 | + | GT2 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_774 | 901628 | 902128 | + | DUF6452 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_775 | 902121 | 902819 | + | DUF6048 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_776 | 902825 | 903397 | + | 2.A.107.1.2 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_777 | 903401 | 904414 | + | ApbE |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_778 | 904510 | 905415 | - | 2.A.7.3.57 |
Gene ID: HRGMv2_0360_1_773
Type: CAZyme
Location: 900675 - 901625 (+)
Type: CAZyme
Location: 900675 - 901625 (+)
Gene ID: HRGMv2_0360_1_774
Type: pfam
Location: 901628 - 902128 (+)
Type: pfam
Location: 901628 - 902128 (+)
Gene ID: HRGMv2_0360_1_775
Type: pfam
Location: 902121 - 902819 (+)
Type: pfam
Location: 902121 - 902819 (+)
Gene ID: HRGMv2_0360_1_776
Type: TC
Location: 902825 - 903397 (+)
Type: TC
Location: 902825 - 903397 (+)
Gene ID: HRGMv2_0360_1_777
Type: pfam
Location: 903401 - 904414 (+)
Type: pfam
Location: 903401 - 904414 (+)
Gene ID: HRGMv2_0360_1_778
Type: TC
Location: 904510 - 905415 (-)
Type: TC
Location: 904510 - 905415 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.