Cluster: HRGMv2_0360_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_503 | 596850 | 599603 | - | 1.B.42.1.8 |
| STP | HRGMv2_0360_1 | HRGMv2_0360_1_504 | 599693 | 600232 | - | HD |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_505 | 600279 | 601466 | + | GH171 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_506 | 601538 | 602863 | - | 3.A.5.1.1 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_507 | 602929 | 604251 | - | 2.A.66.1.28 |
Gene ID: HRGMv2_0360_1_503
Type: TC
Location: 596850 - 599603 (-)
Type: TC
Location: 596850 - 599603 (-)
Gene ID: HRGMv2_0360_1_504
Type: STP
Location: 599693 - 600232 (-)
Type: STP
Location: 599693 - 600232 (-)
Gene ID: HRGMv2_0360_1_505
Type: CAZyme
Location: 600279 - 601466 (+)
Type: CAZyme
Location: 600279 - 601466 (+)
Gene ID: HRGMv2_0360_1_506
Type: TC
Location: 601538 - 602863 (-)
Type: TC
Location: 601538 - 602863 (-)
Gene ID: HRGMv2_0360_1_507
Type: TC
Location: 602929 - 604251 (-)
Type: TC
Location: 602929 - 604251 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.