Cluster: HRGMv2_0360_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_20 | 22679 | 23782 | - | GH18 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_21 | 23819 | 25429 | - | 8.A.46.2.2 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_22 | 25454 | 28540 | - | 1.B.14.6.13 |
Gene ID: HRGMv2_0360_1_20
Type: CAZyme
Location: 22679 - 23782 (-)
Type: CAZyme
Location: 22679 - 23782 (-)
Gene ID: HRGMv2_0360_1_21
Type: TC
Location: 23819 - 25429 (-)
Type: TC
Location: 23819 - 25429 (-)
Gene ID: HRGMv2_0360_1_22
Type: TC
Location: 25454 - 28540 (-)
Type: TC
Location: 25454 - 28540 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0360_1_20 | vegetarian > vegan | 2.56742 | 0.04321 |