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Cluster: HRGMv2_0356_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0356_2 HRGMv2_0356_2_24 19513 20487 + 2.A.69.3.5
CAZyme HRGMv2_0356_2 HRGMv2_0356_2_25 20577 22895 - GH105 | GH154
TF HRGMv2_0356_2 HRGMv2_0356_2_26 22936 26988 - HTH_AraC
pfam HRGMv2_0356_2 HRGMv2_0356_2_27 27217 29253 - SusD_RagB | SusD-like_3
TC HRGMv2_0356_2 HRGMv2_0356_2_28 29296 32559 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_0356_2 HRGMv2_0356_2_29 33113 34009 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_0356_2 HRGMv2_0356_2_30 34211 35113 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0356_2 HRGMv2_0356_2_31 35253 38363 + GH128
Gene ID: HRGMv2_0356_2_24
Type: TC
Location: 19513 - 20487 (+)
Gene ID: HRGMv2_0356_2_25
Type: CAZyme
Location: 20577 - 22895 (-)
Gene ID: HRGMv2_0356_2_26
Type: TF
Location: 22936 - 26988 (-)
Gene ID: HRGMv2_0356_2_27
Type: pfam
Location: 27217 - 29253 (-)
Gene ID: HRGMv2_0356_2_28
Type: TC
Location: 29296 - 32559 (-)
Gene ID: HRGMv2_0356_2_29
Type:
Location: 33113 - 34009 (+)
Gene ID: HRGMv2_0356_2_30
Type:
Location: 34211 - 35113 (+)
Gene ID: HRGMv2_0356_2_31
Type: CAZyme
Location: 35253 - 38363 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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