dbCAN Logo

Cluster: HRGMv2_0356_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0356_12 HRGMv2_0356_12_38 46908 48491 + 3.A.2.1.2
TC HRGMv2_0356_12 HRGMv2_0356_12_39 48557 49444 + 3.A.2.1.1
STP HRGMv2_0356_12 HRGMv2_0356_12_40 49494 50036 + Fer4 | Fer4
pfam HRGMv2_0356_12 HRGMv2_0356_12_41 50049 50576 + Oxidored_q3
TC HRGMv2_0356_12 HRGMv2_0356_12_42 50582 50893 + 3.D.1.2.1
TC HRGMv2_0356_12 HRGMv2_0356_12_43 50907 52871 + 3.D.9.1.1
TC HRGMv2_0356_12 HRGMv2_0356_12_44 52896 54410 + 3.D.1.2.1
TC HRGMv2_0356_12 HRGMv2_0356_12_45 54457 55899 + 3.D.9.1.1
NULL(UNKNOWN) HRGMv2_0356_12 HRGMv2_0356_12_46 56041 56205 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0356_12 HRGMv2_0356_12_47 56466 58430 + GH133
CAZyme HRGMv2_0356_12 HRGMv2_0356_12_48 58435 59700 + GT4
CAZyme HRGMv2_0356_12 HRGMv2_0356_12_49 59760 61211 + GH57
Gene ID: HRGMv2_0356_12_38
Type: TC
Location: 46908 - 48491 (+)
Gene ID: HRGMv2_0356_12_39
Type: TC
Location: 48557 - 49444 (+)
Gene ID: HRGMv2_0356_12_40
Type: STP
Location: 49494 - 50036 (+)
Gene ID: HRGMv2_0356_12_41
Type: pfam
Location: 50049 - 50576 (+)
Gene ID: HRGMv2_0356_12_42
Type: TC
Location: 50582 - 50893 (+)
Gene ID: HRGMv2_0356_12_43
Type: TC
Location: 50907 - 52871 (+)
Gene ID: HRGMv2_0356_12_44
Type: TC
Location: 52896 - 54410 (+)
Gene ID: HRGMv2_0356_12_45
Type: TC
Location: 54457 - 55899 (+)
Gene ID: HRGMv2_0356_12_46
Type:
Location: 56041 - 56205 (+)
Gene ID: HRGMv2_0356_12_47
Type: CAZyme
Location: 56466 - 58430 (+)
Gene ID: HRGMv2_0356_12_48
Type: CAZyme
Location: 58435 - 59700 (+)
Gene ID: HRGMv2_0356_12_49
Type: CAZyme
Location: 59760 - 61211 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List