Cluster: HRGMv2_0356_CGC15
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0356
- CGC Family ID: CGCFAM_00296
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0356_11 | HRGMv2_0356_11_61 | 80256 | 81014 | - | 3.D.10.1.5 |
| TC | HRGMv2_0356_11 | HRGMv2_0356_11_62 | 81026 | 83020 | - | 3.D.10.1.5 |
| NULL(UNKNOWN) | HRGMv2_0356_11 | HRGMv2_0356_11_63 | 83059 | 84087 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0356_11 | HRGMv2_0356_11_64 | 84589 | 85164 | + | ORF6N |
| CAZyme | HRGMv2_0356_11 | HRGMv2_0356_11_65 | 85303 | 87600 | - | GH92 |
| pfam | HRGMv2_0356_11 | HRGMv2_0356_11_66 | 87686 | 88807 | + | HGSNAT_cat | DUF5009 |
| CAZyme | HRGMv2_0356_11 | HRGMv2_0356_11_67 | 88808 | 91519 | - | CBM13 |
| STP | HRGMv2_0356_11 | HRGMv2_0356_11_68 | 91759 | 92667 | - | PfkB |
| CAZyme | HRGMv2_0356_11 | HRGMv2_0356_11_69 | 92720 | 94087 | - | GH28 |
| CAZyme | HRGMv2_0356_11 | HRGMv2_0356_11_70 | 94238 | 97054 | - | GH92 |
| NULL(UNKNOWN) | HRGMv2_0356_11 | HRGMv2_0356_11_71 | 97217 | 98800 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0356_11 | HRGMv2_0356_11_72 | 98948 | 100690 | - | SusD_RagB |
| TC | HRGMv2_0356_11 | HRGMv2_0356_11_73 | 100721 | 103762 | - | 1.B.14.6.1 |
| TC | HRGMv2_0356_11 | HRGMv2_0356_11_74 | 104057 | 105280 | + | 2.A.1.7.1 |
Gene ID: HRGMv2_0356_11_61
Type: TC
Location: 80256 - 81014 (-)
Type: TC
Location: 80256 - 81014 (-)
Gene ID: HRGMv2_0356_11_62
Type: TC
Location: 81026 - 83020 (-)
Type: TC
Location: 81026 - 83020 (-)
Gene ID: HRGMv2_0356_11_63
Type:
Location: 83059 - 84087 (-)
Type:
Location: 83059 - 84087 (-)
Gene ID: HRGMv2_0356_11_64
Type: pfam
Location: 84589 - 85164 (+)
Type: pfam
Location: 84589 - 85164 (+)
Gene ID: HRGMv2_0356_11_65
Type: CAZyme
Location: 85303 - 87600 (-)
Type: CAZyme
Location: 85303 - 87600 (-)
Gene ID: HRGMv2_0356_11_66
Type: pfam
Location: 87686 - 88807 (+)
Type: pfam
Location: 87686 - 88807 (+)
Gene ID: HRGMv2_0356_11_67
Type: CAZyme
Location: 88808 - 91519 (-)
Type: CAZyme
Location: 88808 - 91519 (-)
Gene ID: HRGMv2_0356_11_68
Type: STP
Location: 91759 - 92667 (-)
Type: STP
Location: 91759 - 92667 (-)
Gene ID: HRGMv2_0356_11_69
Type: CAZyme
Location: 92720 - 94087 (-)
Type: CAZyme
Location: 92720 - 94087 (-)
Gene ID: HRGMv2_0356_11_70
Type: CAZyme
Location: 94238 - 97054 (-)
Type: CAZyme
Location: 94238 - 97054 (-)
Gene ID: HRGMv2_0356_11_71
Type:
Location: 97217 - 98800 (-)
Type:
Location: 97217 - 98800 (-)
Gene ID: HRGMv2_0356_11_72
Type: pfam
Location: 98948 - 100690 (-)
Type: pfam
Location: 98948 - 100690 (-)
Gene ID: HRGMv2_0356_11_73
Type: TC
Location: 100721 - 103762 (-)
Type: TC
Location: 100721 - 103762 (-)
Gene ID: HRGMv2_0356_11_74
Type: TC
Location: 104057 - 105280 (+)
Type: TC
Location: 104057 - 105280 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp900549375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.