Cluster: HRGMv2_0354_CGC7
🧬 Cluster Details
- Gene Count: 29
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0354
- CGC Family ID: CGCFAM_00395
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0354_3 | HRGMv2_0354_3_69 | 85391 | 86902 | + | GH30_2 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_70 | 87014 | 90001 | + | 1.B.14.6.1 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_71 | 90007 | 91752 | + | 8.A.46.1.1 |
| TF | HRGMv2_0354_3 | HRGMv2_0354_3_72 | 92047 | 94887 | + | HTH_AraC |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_73 | 95112 | 98177 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0354_3 | HRGMv2_0354_3_74 | 98189 | 99955 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0354_3 | HRGMv2_0354_3_75 | 100044 | 101990 | + | GH97 |
| pfam | HRGMv2_0354_3 | HRGMv2_0354_3_76 | 102148 | 103824 | - | AMP-binding | AMP-binding_C |
| CAZyme | HRGMv2_0354_3 | HRGMv2_0354_3_77 | 104188 | 105624 | - | GH57 |
| CAZyme | HRGMv2_0354_3 | HRGMv2_0354_3_78 | 105671 | 106933 | - | GT4 |
| CAZyme | HRGMv2_0354_3 | HRGMv2_0354_3_79 | 106955 | 108907 | - | GH133 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_80 | 109161 | 110618 | - | 3.D.9.1.1 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_81 | 110645 | 112162 | - | 3.D.1.2.1 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_82 | 112188 | 114173 | - | 3.D.1.2.1 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_83 | 114176 | 114487 | - | 3.D.1.2.1 |
| pfam | HRGMv2_0354_3 | HRGMv2_0354_3_84 | 114493 | 115020 | - | Oxidored_q3 |
| STP | HRGMv2_0354_3 | HRGMv2_0354_3_85 | 115057 | 115590 | - | Fer4 | Fer4 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_86 | 115610 | 116488 | - | 3.A.2.1.1 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_87 | 116501 | 118087 | - | 3.A.2.1.3 |
| pfam | HRGMv2_0354_3 | HRGMv2_0354_3_88 | 118090 | 118635 | - | OSCP |
| pfam | HRGMv2_0354_3 | HRGMv2_0354_3_89 | 118640 | 119137 | - | ATP-synt_B | YMF19 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_90 | 119222 | 119491 | - | 3.A.2.1.6 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_91 | 119555 | 120928 | - | 3.A.2.1.6 |
| pfam | HRGMv2_0354_3 | HRGMv2_0354_3_92 | 120949 | 121185 | - | ATP-synt_DE_N |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_93 | 121194 | 122696 | - | 3.A.2.1.2 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_94 | 122753 | 123832 | - | 3.D.1.5.1 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_95 | 123882 | 125513 | - | 3.D.1.5.1 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_96 | 125520 | 126134 | - | 3.D.1.6.1 |
| TC | HRGMv2_0354_3 | HRGMv2_0354_3_97 | 126125 | 126496 | - | 3.D.1.8.1 |
Gene ID: HRGMv2_0354_3_69
Type: CAZyme
Location: 85391 - 86902 (+)
Type: CAZyme
Location: 85391 - 86902 (+)
Gene ID: HRGMv2_0354_3_70
Type: TC
Location: 87014 - 90001 (+)
Type: TC
Location: 87014 - 90001 (+)
Gene ID: HRGMv2_0354_3_71
Type: TC
Location: 90007 - 91752 (+)
Type: TC
Location: 90007 - 91752 (+)
Gene ID: HRGMv2_0354_3_72
Type: TF
Location: 92047 - 94887 (+)
Type: TF
Location: 92047 - 94887 (+)
Gene ID: HRGMv2_0354_3_73
Type: TC
Location: 95112 - 98177 (+)
Type: TC
Location: 95112 - 98177 (+)
Gene ID: HRGMv2_0354_3_74
Type: pfam
Location: 98189 - 99955 (+)
Type: pfam
Location: 98189 - 99955 (+)
Gene ID: HRGMv2_0354_3_75
Type: CAZyme
Location: 100044 - 101990 (+)
Type: CAZyme
Location: 100044 - 101990 (+)
Gene ID: HRGMv2_0354_3_76
Type: pfam
Location: 102148 - 103824 (-)
Type: pfam
Location: 102148 - 103824 (-)
Gene ID: HRGMv2_0354_3_77
Type: CAZyme
Location: 104188 - 105624 (-)
Type: CAZyme
Location: 104188 - 105624 (-)
Gene ID: HRGMv2_0354_3_78
Type: CAZyme
Location: 105671 - 106933 (-)
Type: CAZyme
Location: 105671 - 106933 (-)
Gene ID: HRGMv2_0354_3_79
Type: CAZyme
Location: 106955 - 108907 (-)
Type: CAZyme
Location: 106955 - 108907 (-)
Gene ID: HRGMv2_0354_3_80
Type: TC
Location: 109161 - 110618 (-)
Type: TC
Location: 109161 - 110618 (-)
Gene ID: HRGMv2_0354_3_81
Type: TC
Location: 110645 - 112162 (-)
Type: TC
Location: 110645 - 112162 (-)
Gene ID: HRGMv2_0354_3_82
Type: TC
Location: 112188 - 114173 (-)
Type: TC
Location: 112188 - 114173 (-)
Gene ID: HRGMv2_0354_3_83
Type: TC
Location: 114176 - 114487 (-)
Type: TC
Location: 114176 - 114487 (-)
Gene ID: HRGMv2_0354_3_84
Type: pfam
Location: 114493 - 115020 (-)
Type: pfam
Location: 114493 - 115020 (-)
Gene ID: HRGMv2_0354_3_85
Type: STP
Location: 115057 - 115590 (-)
Type: STP
Location: 115057 - 115590 (-)
Gene ID: HRGMv2_0354_3_86
Type: TC
Location: 115610 - 116488 (-)
Type: TC
Location: 115610 - 116488 (-)
Gene ID: HRGMv2_0354_3_87
Type: TC
Location: 116501 - 118087 (-)
Type: TC
Location: 116501 - 118087 (-)
Gene ID: HRGMv2_0354_3_88
Type: pfam
Location: 118090 - 118635 (-)
Type: pfam
Location: 118090 - 118635 (-)
Gene ID: HRGMv2_0354_3_89
Type: pfam
Location: 118640 - 119137 (-)
Type: pfam
Location: 118640 - 119137 (-)
Gene ID: HRGMv2_0354_3_90
Type: TC
Location: 119222 - 119491 (-)
Type: TC
Location: 119222 - 119491 (-)
Gene ID: HRGMv2_0354_3_91
Type: TC
Location: 119555 - 120928 (-)
Type: TC
Location: 119555 - 120928 (-)
Gene ID: HRGMv2_0354_3_92
Type: pfam
Location: 120949 - 121185 (-)
Type: pfam
Location: 120949 - 121185 (-)
Gene ID: HRGMv2_0354_3_93
Type: TC
Location: 121194 - 122696 (-)
Type: TC
Location: 121194 - 122696 (-)
Gene ID: HRGMv2_0354_3_94
Type: TC
Location: 122753 - 123832 (-)
Type: TC
Location: 122753 - 123832 (-)
Gene ID: HRGMv2_0354_3_95
Type: TC
Location: 123882 - 125513 (-)
Type: TC
Location: 123882 - 125513 (-)
Gene ID: HRGMv2_0354_3_96
Type: TC
Location: 125520 - 126134 (-)
Type: TC
Location: 125520 - 126134 (-)
Gene ID: HRGMv2_0354_3_97
Type: TC
Location: 126125 - 126496 (-)
Type: TC
Location: 126125 - 126496 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp900554845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.