Cluster: HRGMv2_0354_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: HRGMv2_0354
- CGC Family ID: CGCFAM_00044
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0354_2 | HRGMv2_0354_2_88 | 95719 | 98874 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0354_2 | HRGMv2_0354_2_89 | 98890 | 100581 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0354_2 | HRGMv2_0354_2_90 | 100597 | 102003 | + | SGBP_B_XBD |
| CAZyme | HRGMv2_0354_2 | HRGMv2_0354_2_91 | 102034 | 104364 | + | GH10 |
| CAZyme | HRGMv2_0354_2 | HRGMv2_0354_2_92 | 104656 | 106350 | + | GH35 |
| TC | HRGMv2_0354_2 | HRGMv2_0354_2_93 | 106382 | 107818 | + | 2.A.2.3.2 |
| CAZyme | HRGMv2_0354_2 | HRGMv2_0354_2_94 | 107832 | 108965 | + | GH10 |
| CAZyme | HRGMv2_0354_2 | HRGMv2_0354_2_95 | 108978 | 109946 | + | GH43_1 |
| CAZyme | HRGMv2_0354_2 | HRGMv2_0354_2_96 | 109959 | 111680 | + | GH67 |
| NULL(UNKNOWN) | HRGMv2_0354_2 | HRGMv2_0354_2_97 | 111857 | 113056 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0354_2 | HRGMv2_0354_2_98 | 113171 | 115105 | + | GH97 |
Gene ID: HRGMv2_0354_2_88
Type: TC
Location: 95719 - 98874 (+)
Type: TC
Location: 95719 - 98874 (+)
Gene ID: HRGMv2_0354_2_89
Type: pfam
Location: 98890 - 100581 (+)
Type: pfam
Location: 98890 - 100581 (+)
Gene ID: HRGMv2_0354_2_90
Type: pfam
Location: 100597 - 102003 (+)
Type: pfam
Location: 100597 - 102003 (+)
Gene ID: HRGMv2_0354_2_91
Type: CAZyme
Location: 102034 - 104364 (+)
Type: CAZyme
Location: 102034 - 104364 (+)
Gene ID: HRGMv2_0354_2_92
Type: CAZyme
Location: 104656 - 106350 (+)
Type: CAZyme
Location: 104656 - 106350 (+)
Gene ID: HRGMv2_0354_2_93
Type: TC
Location: 106382 - 107818 (+)
Type: TC
Location: 106382 - 107818 (+)
Gene ID: HRGMv2_0354_2_94
Type: CAZyme
Location: 107832 - 108965 (+)
Type: CAZyme
Location: 107832 - 108965 (+)
Gene ID: HRGMv2_0354_2_95
Type: CAZyme
Location: 108978 - 109946 (+)
Type: CAZyme
Location: 108978 - 109946 (+)
Gene ID: HRGMv2_0354_2_96
Type: CAZyme
Location: 109959 - 111680 (+)
Type: CAZyme
Location: 109959 - 111680 (+)
Gene ID: HRGMv2_0354_2_97
Type:
Location: 111857 - 113056 (+)
Type:
Location: 111857 - 113056 (+)
Gene ID: HRGMv2_0354_2_98
Type: CAZyme
Location: 113171 - 115105 (+)
Type: CAZyme
Location: 113171 - 115105 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp900554845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.