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Cluster: HRGMv2_0354_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0354_1 HRGMv2_0354_1_224 267471 268892 - 2.A.25.1.5
NULL(UNKNOWN) HRGMv2_0354_1 HRGMv2_0354_1_225 268923 269258 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0354_1 HRGMv2_0354_1_226 269410 270282 + 3.A.1.115.1
NULL(UNKNOWN) HRGMv2_0354_1 HRGMv2_0354_1_227 270272 271048 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0354_1 HRGMv2_0354_1_228 271055 271408 + GntR
TC HRGMv2_0354_1 HRGMv2_0354_1_229 271420 272385 + 3.A.1.128.7
pfam HRGMv2_0354_1 HRGMv2_0354_1_230 272397 273719 + ABC2_membrane_3
CAZyme HRGMv2_0354_1 HRGMv2_0354_1_231 273915 275495 - GT83
Gene ID: HRGMv2_0354_1_224
Type: TC
Location: 267471 - 268892 (-)
Gene ID: HRGMv2_0354_1_225
Type:
Location: 268923 - 269258 (-)
Gene ID: HRGMv2_0354_1_226
Type: TC
Location: 269410 - 270282 (+)
Gene ID: HRGMv2_0354_1_227
Type:
Location: 270272 - 271048 (+)
Gene ID: HRGMv2_0354_1_228
Type: TF
Location: 271055 - 271408 (+)
Gene ID: HRGMv2_0354_1_229
Type: TC
Location: 271420 - 272385 (+)
Gene ID: HRGMv2_0354_1_230
Type: pfam
Location: 272397 - 273719 (+)
Gene ID: HRGMv2_0354_1_231
Type: CAZyme
Location: 273915 - 275495 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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