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Cluster: HRGMv2_0353_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0353_1 HRGMv2_0353_1_11 11601 12758 - 3.B.1.1.2
TC HRGMv2_0353_1 HRGMv2_0353_1_12 12807 13238 - 3.B.1.1.2
pfam HRGMv2_0353_1 HRGMv2_0353_1_13 13271 14197 - LTD | OAD_gamma
TC HRGMv2_0353_1 HRGMv2_0353_1_14 14221 15774 - 3.B.1.1.2
STP HRGMv2_0353_1 HRGMv2_0353_1_15 15842 16264 - Glyoxalase
CAZyme HRGMv2_0353_1 HRGMv2_0353_1_16 16718 18424 + CBM32 | CBM32
pfam HRGMv2_0353_1 HRGMv2_0353_1_17 18502 19422 - EamA | EamA
TC HRGMv2_0353_1 HRGMv2_0353_1_18 19541 22414 + 1.B.42.1.8
pfam HRGMv2_0353_1 HRGMv2_0353_1_19 22711 22989 + DUF4492
TC HRGMv2_0353_1 HRGMv2_0353_1_20 23067 24635 + 3.D.4.3.2
TC HRGMv2_0353_1 HRGMv2_0353_1_21 24632 25798 + 3.D.4.3.2
Gene ID: HRGMv2_0353_1_11
Type: TC
Location: 11601 - 12758 (-)
Gene ID: HRGMv2_0353_1_12
Type: TC
Location: 12807 - 13238 (-)
Gene ID: HRGMv2_0353_1_13
Type: pfam
Location: 13271 - 14197 (-)
Gene ID: HRGMv2_0353_1_14
Type: TC
Location: 14221 - 15774 (-)
Gene ID: HRGMv2_0353_1_15
Type: STP
Location: 15842 - 16264 (-)
Gene ID: HRGMv2_0353_1_16
Type: CAZyme
Location: 16718 - 18424 (+)
Gene ID: HRGMv2_0353_1_17
Type: pfam
Location: 18502 - 19422 (-)
Gene ID: HRGMv2_0353_1_18
Type: TC
Location: 19541 - 22414 (+)
Gene ID: HRGMv2_0353_1_19
Type: pfam
Location: 22711 - 22989 (+)
Gene ID: HRGMv2_0353_1_20
Type: TC
Location: 23067 - 24635 (+)
Gene ID: HRGMv2_0353_1_21
Type: TC
Location: 24632 - 25798 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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