Cluster: HRGMv2_0343_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0343
- CGC Family ID: CGCFAM_02447
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0343_10 | HRGMv2_0343_10_57 | 57410 | 58240 | - | 3.A.1.15.7 |
| pfam | HRGMv2_0343_10 | HRGMv2_0343_10_58 | 58338 | 59636 | + | UPF0004 | Radical_SAM |
| NULL(UNKNOWN) | HRGMv2_0343_10 | HRGMv2_0343_10_59 | 59682 | 60548 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0343_10 | HRGMv2_0343_10_60 | 60560 | 62005 | + | 2.A.38.1.1 |
| NULL(UNKNOWN) | HRGMv2_0343_10 | HRGMv2_0343_10_61 | 62002 | 63558 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0343_10 | HRGMv2_0343_10_62 | 63570 | 64031 | + | NfeD |
| CAZyme | HRGMv2_0343_10 | HRGMv2_0343_10_63 | 64068 | 66698 | + | GH31_15 |
Gene ID: HRGMv2_0343_10_57
Type: TC
Location: 57410 - 58240 (-)
Type: TC
Location: 57410 - 58240 (-)
Gene ID: HRGMv2_0343_10_58
Type: pfam
Location: 58338 - 59636 (+)
Type: pfam
Location: 58338 - 59636 (+)
Gene ID: HRGMv2_0343_10_59
Type:
Location: 59682 - 60548 (+)
Type:
Location: 59682 - 60548 (+)
Gene ID: HRGMv2_0343_10_60
Type: TC
Location: 60560 - 62005 (+)
Type: TC
Location: 60560 - 62005 (+)
Gene ID: HRGMv2_0343_10_61
Type:
Location: 62002 - 63558 (+)
Type:
Location: 62002 - 63558 (+)
Gene ID: HRGMv2_0343_10_62
Type: pfam
Location: 63570 - 64031 (+)
Type: pfam
Location: 63570 - 64031 (+)
Gene ID: HRGMv2_0343_10_63
Type: CAZyme
Location: 64068 - 66698 (+)
Type: CAZyme
Location: 64068 - 66698 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp900761235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.