Cluster: HRGMv2_0341_CGC45
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0341
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0341_23 | HRGMv2_0341_23_23 | 26410 | 27372 | - | GT2 |
| TC | HRGMv2_0341_23 | HRGMv2_0341_23_24 | 27556 | 29208 | - | 4.C.1.1.4 |
| TF | HRGMv2_0341_23 | HRGMv2_0341_23_25 | 29221 | 29802 | - | HTH_3 |
| CAZyme | HRGMv2_0341_23 | HRGMv2_0341_23_26 | 29964 | 31949 | - | GH97 |
| NULL(UNKNOWN) | HRGMv2_0341_23 | HRGMv2_0341_23_27 | 32273 | 33058 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0341_23 | HRGMv2_0341_23_28 | 33420 | 34601 | - | GH130_3 |
| CAZyme | HRGMv2_0341_23 | HRGMv2_0341_23_29 | 34640 | 37333 | - | GH2 |
| pfam | HRGMv2_0341_23 | HRGMv2_0341_23_30 | 37529 | 38224 | - | DUF3823 |
| TC | HRGMv2_0341_23 | HRGMv2_0341_23_31 | 38245 | 40095 | - | 8.A.46.1.5 |
| TC | HRGMv2_0341_23 | HRGMv2_0341_23_32 | 40108 | 43488 | - | 1.B.14.6.1 |
| STP | HRGMv2_0341_23 | HRGMv2_0341_23_33 | 43611 | 44813 | - | FecR |
| STP | HRGMv2_0341_23 | HRGMv2_0341_23_34 | 44881 | 45468 | - | Sigma70_r4_2 |
| CAZyme | HRGMv2_0341_23 | HRGMv2_0341_23_35 | 45852 | 46886 | - | GH159 |
| pfam | HRGMv2_0341_23 | HRGMv2_0341_23_36 | 47017 | 47949 | - | MMR_HSR1 | RsgA_GTPase | RsgA_N |
| pfam | HRGMv2_0341_23 | HRGMv2_0341_23_37 | 47949 | 48617 | - | RRF |
| TC | HRGMv2_0341_23 | HRGMv2_0341_23_38 | 48760 | 49935 | - | 2.A.1.7.17 |
Gene ID: HRGMv2_0341_23_23
Type: CAZyme
Location: 26410 - 27372 (-)
Type: CAZyme
Location: 26410 - 27372 (-)
Gene ID: HRGMv2_0341_23_24
Type: TC
Location: 27556 - 29208 (-)
Type: TC
Location: 27556 - 29208 (-)
Gene ID: HRGMv2_0341_23_25
Type: TF
Location: 29221 - 29802 (-)
Type: TF
Location: 29221 - 29802 (-)
Gene ID: HRGMv2_0341_23_26
Type: CAZyme
Location: 29964 - 31949 (-)
Type: CAZyme
Location: 29964 - 31949 (-)
Gene ID: HRGMv2_0341_23_27
Type:
Location: 32273 - 33058 (+)
Type:
Location: 32273 - 33058 (+)
Gene ID: HRGMv2_0341_23_28
Type: CAZyme
Location: 33420 - 34601 (-)
Type: CAZyme
Location: 33420 - 34601 (-)
Gene ID: HRGMv2_0341_23_29
Type: CAZyme
Location: 34640 - 37333 (-)
Type: CAZyme
Location: 34640 - 37333 (-)
Gene ID: HRGMv2_0341_23_30
Type: pfam
Location: 37529 - 38224 (-)
Type: pfam
Location: 37529 - 38224 (-)
Gene ID: HRGMv2_0341_23_31
Type: TC
Location: 38245 - 40095 (-)
Type: TC
Location: 38245 - 40095 (-)
Gene ID: HRGMv2_0341_23_32
Type: TC
Location: 40108 - 43488 (-)
Type: TC
Location: 40108 - 43488 (-)
Gene ID: HRGMv2_0341_23_33
Type: STP
Location: 43611 - 44813 (-)
Type: STP
Location: 43611 - 44813 (-)
Gene ID: HRGMv2_0341_23_34
Type: STP
Location: 44881 - 45468 (-)
Type: STP
Location: 44881 - 45468 (-)
Gene ID: HRGMv2_0341_23_35
Type: CAZyme
Location: 45852 - 46886 (-)
Type: CAZyme
Location: 45852 - 46886 (-)
Gene ID: HRGMv2_0341_23_36
Type: pfam
Location: 47017 - 47949 (-)
Type: pfam
Location: 47017 - 47949 (-)
Gene ID: HRGMv2_0341_23_37
Type: pfam
Location: 47949 - 48617 (-)
Type: pfam
Location: 47949 - 48617 (-)
Gene ID: HRGMv2_0341_23_38
Type: TC
Location: 48760 - 49935 (-)
Type: TC
Location: 48760 - 49935 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900548175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.