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Cluster: HRGMv2_0341_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0341_13 HRGMv2_0341_13_20 22297 23490 - GH171
TF HRGMv2_0341_13 HRGMv2_0341_13_21 23828 24385 + GerE
STP HRGMv2_0341_13 HRGMv2_0341_13_22 24592 25518 + FecR
TC HRGMv2_0341_13 HRGMv2_0341_13_23 25732 28947 + 1.B.14.6.1
pfam HRGMv2_0341_13 HRGMv2_0341_13_24 28958 30571 + SusD_RagB | SusD-like_2 | SusD-like_3
CAZyme HRGMv2_0341_13 HRGMv2_0341_13_25 30619 32166 + GH142
CAZyme HRGMv2_0341_13 HRGMv2_0341_13_26 32180 34039 + GH127
CAZyme HRGMv2_0341_13 HRGMv2_0341_13_27 34057 36096 + GH127
pfam HRGMv2_0341_13 HRGMv2_0341_13_28 36162 36890 - DUF6064
pfam HRGMv2_0341_13 HRGMv2_0341_13_29 36897 37400 - ThrE_2
TC HRGMv2_0341_13 HRGMv2_0341_13_30 37397 38164 - 2.A.79.2.1
Gene ID: HRGMv2_0341_13_20
Type: CAZyme
Location: 22297 - 23490 (-)
Gene ID: HRGMv2_0341_13_21
Type: TF
Location: 23828 - 24385 (+)
Gene ID: HRGMv2_0341_13_22
Type: STP
Location: 24592 - 25518 (+)
Gene ID: HRGMv2_0341_13_23
Type: TC
Location: 25732 - 28947 (+)
Gene ID: HRGMv2_0341_13_24
Type: pfam
Location: 28958 - 30571 (+)
Gene ID: HRGMv2_0341_13_25
Type: CAZyme
Location: 30619 - 32166 (+)
Gene ID: HRGMv2_0341_13_26
Type: CAZyme
Location: 32180 - 34039 (+)
Gene ID: HRGMv2_0341_13_27
Type: CAZyme
Location: 34057 - 36096 (+)
Gene ID: HRGMv2_0341_13_28
Type: pfam
Location: 36162 - 36890 (-)
Gene ID: HRGMv2_0341_13_29
Type: pfam
Location: 36897 - 37400 (-)
Gene ID: HRGMv2_0341_13_30
Type: TC
Location: 37397 - 38164 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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