Cluster: HRGMv2_0341_CGC18
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0341
- CGC Family ID: CGCFAM_01165
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0341_6 | HRGMv2_0341_6_28 | 41976 | 42317 | + | 1.E.14.1.15 |
| TC | HRGMv2_0341_6 | HRGMv2_0341_6_29 | 42324 | 43025 | + | 2.A.122.1.1 |
| pfam | HRGMv2_0341_6 | HRGMv2_0341_6_30 | 43187 | 44605 | + | AdoHcyase_NAD | 2-Hacid_dh_C | AdoHcyase | KARI_N |
| TC | HRGMv2_0341_6 | HRGMv2_0341_6_31 | 44719 | 47235 | - | 9.B.144.1.4 |
| CAZyme | HRGMv2_0341_6 | HRGMv2_0341_6_32 | 47326 | 48090 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0341_6 | HRGMv2_0341_6_33 | 48094 | 48213 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_0341_6 | HRGMv2_0341_6_34 | 48210 | 48527 | - | NTP_transf_2 |
| CAZyme | HRGMv2_0341_6 | HRGMv2_0341_6_35 | 48524 | 49783 | - | GT4 |
| CAZyme | HRGMv2_0341_6 | HRGMv2_0341_6_36 | 49783 | 50742 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0341_6 | HRGMv2_0341_6_37 | 50739 | 51632 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0341_6 | HRGMv2_0341_6_38 | 51635 | 52516 | - | GT2 |
| CAZyme | HRGMv2_0341_6 | HRGMv2_0341_6_39 | 52613 | 53443 | + | GT23 |
Gene ID: HRGMv2_0341_6_28
Type: TC
Location: 41976 - 42317 (+)
Type: TC
Location: 41976 - 42317 (+)
Gene ID: HRGMv2_0341_6_29
Type: TC
Location: 42324 - 43025 (+)
Type: TC
Location: 42324 - 43025 (+)
Gene ID: HRGMv2_0341_6_30
Type: pfam
Location: 43187 - 44605 (+)
Type: pfam
Location: 43187 - 44605 (+)
Gene ID: HRGMv2_0341_6_31
Type: TC
Location: 44719 - 47235 (-)
Type: TC
Location: 44719 - 47235 (-)
Gene ID: HRGMv2_0341_6_32
Type: CAZyme
Location: 47326 - 48090 (-)
Type: CAZyme
Location: 47326 - 48090 (-)
Gene ID: HRGMv2_0341_6_33
Type:
Location: 48094 - 48213 (-)
Type:
Location: 48094 - 48213 (-)
Gene ID: HRGMv2_0341_6_34
Type: STP
Location: 48210 - 48527 (-)
Type: STP
Location: 48210 - 48527 (-)
Gene ID: HRGMv2_0341_6_35
Type: CAZyme
Location: 48524 - 49783 (-)
Type: CAZyme
Location: 48524 - 49783 (-)
Gene ID: HRGMv2_0341_6_36
Type: CAZyme
Location: 49783 - 50742 (-)
Type: CAZyme
Location: 49783 - 50742 (-)
Gene ID: HRGMv2_0341_6_37
Type:
Location: 50739 - 51632 (-)
Type:
Location: 50739 - 51632 (-)
Gene ID: HRGMv2_0341_6_38
Type: CAZyme
Location: 51635 - 52516 (-)
Type: CAZyme
Location: 51635 - 52516 (-)
Gene ID: HRGMv2_0341_6_39
Type: CAZyme
Location: 52613 - 53443 (+)
Type: CAZyme
Location: 52613 - 53443 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900548175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.