Cluster: HRGMv2_0339_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0339
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0339_1 | HRGMv2_0339_1_153 | 174591 | 175916 | + | 2.A.66.1.28 |
| pfam | HRGMv2_0339_1 | HRGMv2_0339_1_154 | 175967 | 177010 | + | IMS | IMS_HHH | IMS_C | IMS_HHH_1 |
| CAZyme | HRGMv2_0339_1 | HRGMv2_0339_1_155 | 177023 | 177772 | - | CE4 |
| pfam | HRGMv2_0339_1 | HRGMv2_0339_1_156 | 177805 | 178983 | - | AP_endonuc_2 | UxuA |
| pfam | HRGMv2_0339_1 | HRGMv2_0339_1_157 | 179021 | 179833 | - | adh_short | Epimerase | KR | adh_short_C2 |
| CAZyme | HRGMv2_0339_1 | HRGMv2_0339_1_158 | 179948 | 182251 | + | GH78 |
| CAZyme | HRGMv2_0339_1 | HRGMv2_0339_1_159 | 182316 | 184088 | + | GH78 |
Gene ID: HRGMv2_0339_1_153
Type: TC
Location: 174591 - 175916 (+)
Type: TC
Location: 174591 - 175916 (+)
Gene ID: HRGMv2_0339_1_154
Type: pfam
Location: 175967 - 177010 (+)
Type: pfam
Location: 175967 - 177010 (+)
Gene ID: HRGMv2_0339_1_155
Type: CAZyme
Location: 177023 - 177772 (-)
Type: CAZyme
Location: 177023 - 177772 (-)
Gene ID: HRGMv2_0339_1_156
Type: pfam
Location: 177805 - 178983 (-)
Type: pfam
Location: 177805 - 178983 (-)
Gene ID: HRGMv2_0339_1_157
Type: pfam
Location: 179021 - 179833 (-)
Type: pfam
Location: 179021 - 179833 (-)
Gene ID: HRGMv2_0339_1_158
Type: CAZyme
Location: 179948 - 182251 (+)
Type: CAZyme
Location: 179948 - 182251 (+)
Gene ID: HRGMv2_0339_1_159
Type: CAZyme
Location: 182316 - 184088 (+)
Type: CAZyme
Location: 182316 - 184088 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp944323075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.