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Cluster: HRGMv2_0339_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0339_5 HRGMv2_0339_5_189 230357 231661 - 2.A.23.1.2
pfam HRGMv2_0339_5 HRGMv2_0339_5_190 231822 232991 - Pect-lyase_RHGA_epim
TC HRGMv2_0339_5 HRGMv2_0339_5_191 233155 234435 + 9.B.196.1.2
CAZyme HRGMv2_0339_5 HRGMv2_0339_5_192 234564 237125 + GH3
pfam HRGMv2_0339_5 HRGMv2_0339_5_193 237254 240472 + MGS | ATP-grasp | ATP-grasp | CPSase_L_D2 | CPSase_L_D2 | CPSase_L_D3 | Dala_Dala_lig_C | Dala_Dala_lig_C
TC HRGMv2_0339_5 HRGMv2_0339_5_194 240681 242132 - 1.I.1.1.3
CAZyme HRGMv2_0339_5 HRGMv2_0339_5_195 242186 244891 - CBM67 | GH78
NULL(UNKNOWN) HRGMv2_0339_5 HRGMv2_0339_5_196 244929 246203 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0339_5 HRGMv2_0339_5_197 246420 248060 - GH78
Gene ID: HRGMv2_0339_5_189
Type: TC
Location: 230357 - 231661 (-)
Gene ID: HRGMv2_0339_5_190
Type: pfam
Location: 231822 - 232991 (-)
Gene ID: HRGMv2_0339_5_191
Type: TC
Location: 233155 - 234435 (+)
Gene ID: HRGMv2_0339_5_192
Type: CAZyme
Location: 234564 - 237125 (+)
Gene ID: HRGMv2_0339_5_193
Type: pfam
Location: 237254 - 240472 (+)
Gene ID: HRGMv2_0339_5_194
Type: TC
Location: 240681 - 242132 (-)
Gene ID: HRGMv2_0339_5_195
Type: CAZyme
Location: 242186 - 244891 (-)
Gene ID: HRGMv2_0339_5_196
Type:
Location: 244929 - 246203 (-)
Gene ID: HRGMv2_0339_5_197
Type: CAZyme
Location: 246420 - 248060 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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