Cluster: HRGMv2_0339_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0339
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0339_2 | HRGMv2_0339_2_291 | 354857 | 355969 | - | GT28 |
| TC | HRGMv2_0339_2 | HRGMv2_0339_2_292 | 356005 | 357291 | - | 2.A.103.1.3 |
| pfam | HRGMv2_0339_2 | HRGMv2_0339_2_293 | 357307 | 358647 | - | Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N |
| TC | HRGMv2_0339_2 | HRGMv2_0339_2_294 | 358650 | 359897 | - | 9.B.146.1.6 |
| pfam | HRGMv2_0339_2 | HRGMv2_0339_2_295 | 359931 | 361379 | - | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_0339_2 | HRGMv2_0339_2_296 | 361554 | 363797 | - | 2.A.37.1.5 |
Gene ID: HRGMv2_0339_2_291
Type: CAZyme
Location: 354857 - 355969 (-)
Type: CAZyme
Location: 354857 - 355969 (-)
Gene ID: HRGMv2_0339_2_292
Type: TC
Location: 356005 - 357291 (-)
Type: TC
Location: 356005 - 357291 (-)
Gene ID: HRGMv2_0339_2_293
Type: pfam
Location: 357307 - 358647 (-)
Type: pfam
Location: 357307 - 358647 (-)
Gene ID: HRGMv2_0339_2_294
Type: TC
Location: 358650 - 359897 (-)
Type: TC
Location: 358650 - 359897 (-)
Gene ID: HRGMv2_0339_2_295
Type: pfam
Location: 359931 - 361379 (-)
Type: pfam
Location: 359931 - 361379 (-)
Gene ID: HRGMv2_0339_2_296
Type: TC
Location: 361554 - 363797 (-)
Type: TC
Location: 361554 - 363797 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp944323075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.