Cluster: HRGMv2_0335_CGC30
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0335
- CGC Family ID: CGCFAM_00602
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0335_26 | HRGMv2_0335_26_11 | 21022 | 22098 | + | 2.A.6.2.28 |
| TC | HRGMv2_0335_26 | HRGMv2_0335_26_12 | 22120 | 25164 | + | 2.A.6.2.33 |
| pfam | HRGMv2_0335_26 | HRGMv2_0335_26_13 | 25161 | 26486 | + | OEP | OEP |
| TF | HRGMv2_0335_26 | HRGMv2_0335_26_14 | 26823 | 27701 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0335_26 | HRGMv2_0335_26_15 | 27837 | 30860 | + | GH2 |
Gene ID: HRGMv2_0335_26_11
Type: TC
Location: 21022 - 22098 (+)
Type: TC
Location: 21022 - 22098 (+)
Gene ID: HRGMv2_0335_26_12
Type: TC
Location: 22120 - 25164 (+)
Type: TC
Location: 22120 - 25164 (+)
Gene ID: HRGMv2_0335_26_13
Type: pfam
Location: 25161 - 26486 (+)
Type: pfam
Location: 25161 - 26486 (+)
Gene ID: HRGMv2_0335_26_14
Type: TF
Location: 26823 - 27701 (+)
Type: TF
Location: 26823 - 27701 (+)
Gene ID: HRGMv2_0335_26_15
Type: CAZyme
Location: 27837 - 30860 (+)
Type: CAZyme
Location: 27837 - 30860 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp944322325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.