Cluster: HRGMv2_0335_CGC12
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0335
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0335_6 | HRGMv2_0335_6_6 | 4388 | 8254 | + | CBM32 | GH31_18 |
| NULL(UNKNOWN) | HRGMv2_0335_6 | HRGMv2_0335_6_7 | 8446 | 8730 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0335_6 | HRGMv2_0335_6_8 | 9030 | 9899 | - | 1.A.23.2.1 |
| CAZyme | HRGMv2_0335_6 | HRGMv2_0335_6_9 | 10095 | 13196 | - | GH95 |
| pfam | HRGMv2_0335_6 | HRGMv2_0335_6_10 | 13699 | 18012 | + | Laminin_G_3 | Laminin_G_3 | DUF5013 |
| peptidase | HRGMv2_0335_6 | HRGMv2_0335_6_11 | 18024 | 19376 | + | M64.UPW |
| CAZyme | HRGMv2_0335_6 | HRGMv2_0335_6_12 | 19467 | 21659 | - | GH36 |
| NULL(UNKNOWN) | HRGMv2_0335_6 | HRGMv2_0335_6_13 | 21915 | 22076 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0335_6 | HRGMv2_0335_6_14 | 22561 | 23403 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | HRGMv2_0335_6 | HRGMv2_0335_6_15 | 23416 | 24303 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0335_6 | HRGMv2_0335_6_16 | 24300 | 24689 | + | GntR |
| TC | HRGMv2_0335_6 | HRGMv2_0335_6_17 | 24734 | 25456 | + | 3.A.1.122.2 |
| TC | HRGMv2_0335_6 | HRGMv2_0335_6_18 | 25462 | 26718 | + | 3.A.1.122.1 |
| TC | HRGMv2_0335_6 | HRGMv2_0335_6_19 | 26756 | 28003 | + | 3.A.1.122.2 |
Gene ID: HRGMv2_0335_6_6
Type: CAZyme
Location: 4388 - 8254 (+)
Type: CAZyme
Location: 4388 - 8254 (+)
Gene ID: HRGMv2_0335_6_7
Type:
Location: 8446 - 8730 (+)
Type:
Location: 8446 - 8730 (+)
Gene ID: HRGMv2_0335_6_8
Type: TC
Location: 9030 - 9899 (-)
Type: TC
Location: 9030 - 9899 (-)
Gene ID: HRGMv2_0335_6_9
Type: CAZyme
Location: 10095 - 13196 (-)
Type: CAZyme
Location: 10095 - 13196 (-)
Gene ID: HRGMv2_0335_6_10
Type: pfam
Location: 13699 - 18012 (+)
Type: pfam
Location: 13699 - 18012 (+)
Gene ID: HRGMv2_0335_6_11
Type: peptidase
Location: 18024 - 19376 (+)
Type: peptidase
Location: 18024 - 19376 (+)
Gene ID: HRGMv2_0335_6_12
Type: CAZyme
Location: 19467 - 21659 (-)
Type: CAZyme
Location: 19467 - 21659 (-)
Gene ID: HRGMv2_0335_6_13
Type:
Location: 21915 - 22076 (-)
Type:
Location: 21915 - 22076 (-)
Gene ID: HRGMv2_0335_6_14
Type: TC
Location: 22561 - 23403 (+)
Type: TC
Location: 22561 - 23403 (+)
Gene ID: HRGMv2_0335_6_15
Type:
Location: 23416 - 24303 (+)
Type:
Location: 23416 - 24303 (+)
Gene ID: HRGMv2_0335_6_16
Type: TF
Location: 24300 - 24689 (+)
Type: TF
Location: 24300 - 24689 (+)
Gene ID: HRGMv2_0335_6_17
Type: TC
Location: 24734 - 25456 (+)
Type: TC
Location: 24734 - 25456 (+)
Gene ID: HRGMv2_0335_6_18
Type: TC
Location: 25462 - 26718 (+)
Type: TC
Location: 25462 - 26718 (+)
Gene ID: HRGMv2_0335_6_19
Type: TC
Location: 26756 - 28003 (+)
Type: TC
Location: 26756 - 28003 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp944322325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.