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Cluster: HRGMv2_0333_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0333_17 HRGMv2_0333_17_41 47959 50142 - GH36
TF HRGMv2_0333_17 HRGMv2_0333_17_42 50415 51377 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_0333_17 HRGMv2_0333_17_43 51552 55742 - CE7 | CE7
CAZyme HRGMv2_0333_17 HRGMv2_0333_17_44 56417 57565 + GH26
CAZyme HRGMv2_0333_17 HRGMv2_0333_17_45 57595 58782 + GH130_1
TC HRGMv2_0333_17 HRGMv2_0333_17_46 58878 60272 + 2.A.2.3.6
pfam HRGMv2_0333_17 HRGMv2_0333_17_47 60262 61569 + GlcNAc_2-epim | GlcNAc_2-epim
CAZyme HRGMv2_0333_17 HRGMv2_0333_17_48 61790 64132 + GH3
CAZyme HRGMv2_0333_17 HRGMv2_0333_17_49 65068 66897 + GH146
CAZyme HRGMv2_0333_17 HRGMv2_0333_17_50 66900 68312 + GH28
CAZyme HRGMv2_0333_17 HRGMv2_0333_17_51 68334 69533 + GH88
Gene ID: HRGMv2_0333_17_41
Type: CAZyme
Location: 47959 - 50142 (-)
Gene ID: HRGMv2_0333_17_42
Type: TF
Location: 50415 - 51377 (+)
Gene ID: HRGMv2_0333_17_43
Type: CAZyme
Location: 51552 - 55742 (-)
Gene ID: HRGMv2_0333_17_44
Type: CAZyme
Location: 56417 - 57565 (+)
Gene ID: HRGMv2_0333_17_45
Type: CAZyme
Location: 57595 - 58782 (+)
Gene ID: HRGMv2_0333_17_46
Type: TC
Location: 58878 - 60272 (+)
Gene ID: HRGMv2_0333_17_47
Type: pfam
Location: 60262 - 61569 (+)
Gene ID: HRGMv2_0333_17_48
Type: CAZyme
Location: 61790 - 64132 (+)
Gene ID: HRGMv2_0333_17_49
Type: CAZyme
Location: 65068 - 66897 (+)
Gene ID: HRGMv2_0333_17_50
Type: CAZyme
Location: 66900 - 68312 (+)
Gene ID: HRGMv2_0333_17_51
Type: CAZyme
Location: 68334 - 69533 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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