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Cluster: HRGMv2_0325_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0325_4 HRGMv2_0325_4_10 8802 9830 - GT2
pfam HRGMv2_0325_4 HRGMv2_0325_4_11 9843 11297 - Polysacc_synt | Polysacc_synt_3
NULL(UNKNOWN) HRGMv2_0325_4 HRGMv2_0325_4_12 11454 11960 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0325_4 HRGMv2_0325_4_13 12167 13684 + CE12
CAZyme HRGMv2_0325_4 HRGMv2_0325_4_14 13856 15901 - GH67
CAZyme HRGMv2_0325_4 HRGMv2_0325_4_15 15909 17840 - CE20 | CE20
CAZyme HRGMv2_0325_4 HRGMv2_0325_4_16 17859 20405 - GH115
pfam HRGMv2_0325_4 HRGMv2_0325_4_17 20753 21217 - DUF695
TC HRGMv2_0325_4 HRGMv2_0325_4_18 21678 22373 - 2.A.122.1.5
TC HRGMv2_0325_4 HRGMv2_0325_4_19 22354 22707 - 1.E.14.1.13
Gene ID: HRGMv2_0325_4_10
Type: CAZyme
Location: 8802 - 9830 (-)
Gene ID: HRGMv2_0325_4_11
Type: pfam
Location: 9843 - 11297 (-)
Gene ID: HRGMv2_0325_4_12
Type:
Location: 11454 - 11960 (-)
Gene ID: HRGMv2_0325_4_13
Type: CAZyme
Location: 12167 - 13684 (+)
Gene ID: HRGMv2_0325_4_14
Type: CAZyme
Location: 13856 - 15901 (-)
Gene ID: HRGMv2_0325_4_15
Type: CAZyme
Location: 15909 - 17840 (-)
Gene ID: HRGMv2_0325_4_16
Type: CAZyme
Location: 17859 - 20405 (-)
Gene ID: HRGMv2_0325_4_17
Type: pfam
Location: 20753 - 21217 (-)
Gene ID: HRGMv2_0325_4_18
Type: TC
Location: 21678 - 22373 (-)
Gene ID: HRGMv2_0325_4_19
Type: TC
Location: 22354 - 22707 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0325_4_19 vegetarian > vegan 5.08986 0.00565

🧭 Explore Read Mapping of CGC

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