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Cluster: HRGMv2_0323_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0323_2 HRGMv2_0323_2_4 3038 6088 - 2.A.6.2.38
TC HRGMv2_0323_2 HRGMv2_0323_2_5 6085 7098 - 2.A.6.2.11
TF HRGMv2_0323_2 HRGMv2_0323_2_6 7263 8246 + HTH_AraC
CAZyme HRGMv2_0323_2 HRGMv2_0323_2_7 8331 10694 - GH92
pfam HRGMv2_0323_2 HRGMv2_0323_2_8 11005 11874 + adh_short | adh_short_C2
pfam HRGMv2_0323_2 HRGMv2_0323_2_9 12099 13241 - Cyt_bd_oxida_II
TC HRGMv2_0323_2 HRGMv2_0323_2_10 13363 14925 - 3.D.4.3.2
pfam HRGMv2_0323_2 HRGMv2_0323_2_11 14941 15150 - DUF4492
TC HRGMv2_0323_2 HRGMv2_0323_2_12 15658 17097 + 2.A.35.1.1
pfam HRGMv2_0323_2 HRGMv2_0323_2_13 17094 17750 + Hydrolase | HAD | Hydrolase_like | HAD_2
TC HRGMv2_0323_2 HRGMv2_0323_2_14 17880 19037 - 3.A.23.1.1
Gene ID: HRGMv2_0323_2_4
Type: TC
Location: 3038 - 6088 (-)
Gene ID: HRGMv2_0323_2_5
Type: TC
Location: 6085 - 7098 (-)
Gene ID: HRGMv2_0323_2_6
Type: TF
Location: 7263 - 8246 (+)
Gene ID: HRGMv2_0323_2_7
Type: CAZyme
Location: 8331 - 10694 (-)
Gene ID: HRGMv2_0323_2_8
Type: pfam
Location: 11005 - 11874 (+)
Gene ID: HRGMv2_0323_2_9
Type: pfam
Location: 12099 - 13241 (-)
Gene ID: HRGMv2_0323_2_10
Type: TC
Location: 13363 - 14925 (-)
Gene ID: HRGMv2_0323_2_11
Type: pfam
Location: 14941 - 15150 (-)
Gene ID: HRGMv2_0323_2_12
Type: TC
Location: 15658 - 17097 (+)
Gene ID: HRGMv2_0323_2_13
Type: pfam
Location: 17094 - 17750 (+)
Gene ID: HRGMv2_0323_2_14
Type: TC
Location: 17880 - 19037 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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