Cluster: HRGMv2_0323_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0323
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0323_9 | HRGMv2_0323_9_8 | 6726 | 7979 | - | GH5_7 |
| pfam | HRGMv2_0323_9 | HRGMv2_0323_9_9 | 8254 | 8805 | - | Cyclophil_like2 |
| pfam | HRGMv2_0323_9 | HRGMv2_0323_9_10 | 9097 | 10092 | - | DUF362 |
| TC | HRGMv2_0323_9 | HRGMv2_0323_9_11 | 10125 | 12065 | - | 1.B.14.3.1 |
| pfam | HRGMv2_0323_9 | HRGMv2_0323_9_12 | 12686 | 13765 | + | DEDD_Tnp_IS110 | Transposase_20 |
| peptidase | HRGMv2_0323_9 | HRGMv2_0323_9_13 | 14145 | 14396 | + | M41.UPW |
| CAZyme | HRGMv2_0323_9 | HRGMv2_0323_9_14 | 14523 | 17144 | - | GH77 |
Gene ID: HRGMv2_0323_9_8
Type: CAZyme
Location: 6726 - 7979 (-)
Type: CAZyme
Location: 6726 - 7979 (-)
Gene ID: HRGMv2_0323_9_9
Type: pfam
Location: 8254 - 8805 (-)
Type: pfam
Location: 8254 - 8805 (-)
Gene ID: HRGMv2_0323_9_10
Type: pfam
Location: 9097 - 10092 (-)
Type: pfam
Location: 9097 - 10092 (-)
Gene ID: HRGMv2_0323_9_11
Type: TC
Location: 10125 - 12065 (-)
Type: TC
Location: 10125 - 12065 (-)
Gene ID: HRGMv2_0323_9_12
Type: pfam
Location: 12686 - 13765 (+)
Type: pfam
Location: 12686 - 13765 (+)
Gene ID: HRGMv2_0323_9_13
Type: peptidase
Location: 14145 - 14396 (+)
Type: peptidase
Location: 14145 - 14396 (+)
Gene ID: HRGMv2_0323_9_14
Type: CAZyme
Location: 14523 - 17144 (-)
Type: CAZyme
Location: 14523 - 17144 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes excrementigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.