Cluster: HRGMv2_0320_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0320
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0320_2 | HRGMv2_0320_2_99 | 115688 | 117088 | + | GH23 |
| STP | HRGMv2_0320_2 | HRGMv2_0320_2_100 | 117227 | 119995 | - | B12-binding | B12-binding_2 |
| pfam | HRGMv2_0320_2 | HRGMv2_0320_2_101 | 120118 | 120570 | - | SmpB |
| TC | HRGMv2_0320_2 | HRGMv2_0320_2_102 | 120611 | 121186 | - | 9.B.29.3.6 |
Gene ID: HRGMv2_0320_2_99
Type: CAZyme
Location: 115688 - 117088 (+)
Type: CAZyme
Location: 115688 - 117088 (+)
Gene ID: HRGMv2_0320_2_100
Type: STP
Location: 117227 - 119995 (-)
Type: STP
Location: 117227 - 119995 (-)
Gene ID: HRGMv2_0320_2_101
Type: pfam
Location: 120118 - 120570 (-)
Type: pfam
Location: 120118 - 120570 (-)
Gene ID: HRGMv2_0320_2_102
Type: TC
Location: 120611 - 121186 (-)
Type: TC
Location: 120611 - 121186 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ndongoniae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0320_2_102 | vegan > omnivore | 1.01085 | 0.00701 |