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Cluster: HRGMv2_0320_CGC60

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0320_53 HRGMv2_0320_53_3 2919 3662 - GT2
pfam HRGMv2_0320_53 HRGMv2_0320_53_4 3902 7297 + DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
TF HRGMv2_0320_53 HRGMv2_0320_53_5 7298 8182 - HTH_AraC
TC HRGMv2_0320_53 HRGMv2_0320_53_6 8383 9516 + 2.A.6.2.29
TC HRGMv2_0320_53 HRGMv2_0320_53_7 9521 10594 + 2.A.6.2.22
TC HRGMv2_0320_53 HRGMv2_0320_53_8 10658 12661 + 2.A.6.2.22
TC HRGMv2_0320_53 HRGMv2_0320_53_9 12694 14031 + 2.A.6.2.20
Gene ID: HRGMv2_0320_53_3
Type: CAZyme
Location: 2919 - 3662 (-)
Gene ID: HRGMv2_0320_53_4
Type: pfam
Location: 3902 - 7297 (+)
Gene ID: HRGMv2_0320_53_5
Type: TF
Location: 7298 - 8182 (-)
Gene ID: HRGMv2_0320_53_6
Type: TC
Location: 8383 - 9516 (+)
Gene ID: HRGMv2_0320_53_7
Type: TC
Location: 9521 - 10594 (+)
Gene ID: HRGMv2_0320_53_8
Type: TC
Location: 10658 - 12661 (+)
Gene ID: HRGMv2_0320_53_9
Type: TC
Location: 12694 - 14031 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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